Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0252 ATGGAGAGAATGTTCCCTCCCAAGAAGCCCTCTACTATGAATTCCCATGACAGACCCATGTGTGTTCAAGGTGACTCGGGTCTTGTCCTCACCACTGACCCTAAACCTCGCCTCCGTTGGACCGTCGAGCTCCATGAACGCTTTGTCGATGCTGTTACTCAGCTCGGAGGCCCTGATAAGGCAACTCCTAAAACCATCATGAGGGTTATGGGTGTGAAGGGTCTAACACTTTACCACCTCAAGAGCCACCTTCAGAAATTCAGGCTTGGCAAGCAGCCCCACAAGGAATTCAATGATCACTCGATTAAGGATGGTATGAGAGCTTCTGCTTTAGAACTGCAGCGAAACACTGCTTCCTCTTCTGCCATGATTGGCCGCAACATGAATGATAACTCACACATGGTTGATGCGATTAGGATGCAAATAGAGGTGCAGAGAAGATTGCATGAACAACTTGAGGTTCAGAAACACCTTCAGCTAAGGATTGAGGCACAAGGGAAATACATGCAAAGCATATTGGAGAAGGCTTATCAAACACTGGCTGGTGAAAACATGGCATCTGCTGCCACTAACCTAAAGGGTGCTGCTGCTATTGGACCTCACCACCATCAAGGGAACATCCATGACATGACAGGAGTAGTGATGAAGGAGTTTGGTTCCCCTCTTGGTTTCTCTTCATTCCAAGATCTTGAAAACATCTATGGAAATGACCAAATTGACCTTCAGCAAAACATGGAGAAGCCACCAACACTTGACCATGGTTTCATGCCAATGAATGAGGGTTTGTGTCTAGGGAAGAAGAGGTCCAATAGTAACAACAACCCTTATTGTGGGAGTGGTAAGAGCCCTTTGATTTGGAGTGATGATCTAAGGCTTCAAGATTTGGGAGGGCCAGCCTCATCATGCCTTCAAGATCATGATCAGATTCAGATTGCACCACCAGGATCAACATTGGATAGAGGAGCCAGCACTGAGAATATTGATCCAATGTCAGAGATTTATGACTCAAAGCCTGTGCTTCATCAGAGTGAAGATCATAAAAAGTTTGATGCATCATCTATGAAGCTTGAAAGGCCTTCACCAAGAAGAGCACCAACTCTTCAGGCTGAAAGGATGAGCCCTATGATCAGCACTGGCACCATGGCACAAGGTAGAGCCTCACCATTTGGGTGA 1173 0.4638 MERMFPPKKPSTMNSHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDGMRASALELQRNTASSSAMIGRNMNDNSHMVDAIRMQIEVQRRLHEQLEVQKHLQLRIEAQGKYMQSILEKAYQTLAGENMASAATNLKGAAAIGPHHHQGNIHDMTGVVMKEFGSPLGFSSFQDLENIYGNDQIDLQQNMEKPPTLDHGFMPMNEGLCLGKKRSNSNNNPYCGSGKSPLIWSDDLRLQDLGGPASSCLQDHDQIQIAPPGSTLDRGASTENIDPMSEIYDSKPVLHQSEDHKKFDASSMKLERPSPRRAPTLQAERMSPMISTGTMAQGRASPFG 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0252 390 MobiDBLite consensus disorder prediction 338 357 - -
Aed1g0252 390 MobiDBLite consensus disorder prediction 1 20 - -
Aed1g0252 390 MobiDBLite consensus disorder prediction 334 390 - -
Aed1g0252 390 Pfam Myb-like DNA-binding domain 38 86 IPR001005 -
Aed1g0252 390 Pfam MYB-CC type transfactor, LHEQLE motif 134 179 IPR025756 -
Aed1g0252 390 SUPERFAMILY Homeodomain-like 34 90 IPR009057 -
Aed1g0252 390 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 92 IPR017930 -
Aed1g0252 390 PANTHER MYB FAMILY TRANSCRIPTION FACTOR APL 4 338 - -
Aed1g0252 390 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 4 338 IPR044848 GO:0003700
Aed1g0252 390 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 35 90 IPR006447 GO:0003677
Aed1g0252 390 Gene3D - 34 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0252 Aed-Chr1 4260143 4263119 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Aed1g0252 Myb_DNA-binding 2.2e-06 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g0252 1 4260143 4263119 Aed1g0252 1 4260143 4263119 ECH
Aed1g0252 1 4260143 4263119 Aed4g1282 4 13925532 13929494 PCT