Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0085 ATGGCGATGGGGAGCGACGATCGAGACGATAACCGGATGATCAAGGCGAATTTCACCGGCGATGGAGCGGCGAGGCTGAAGGAGAGTGTGATGGACAAGCTCAAGGAATTCATGGGGGATTACACGGATGATACGCTTGTGAGTTTGTGGTTTCGTCACATCCTTGACTTTGCTGGCAAATGCTCCAAAAGCCTTGACATTGCAGCCAAAAAGCTTGATGTGGATACACTATGTATTATGCACACTTCTATCTACAAGTGTGATTACGTTGTTGTGTTATTGAGGAATGGTAGGCGCAAAGAACAAGCAAGGAATGATTTGAATGTTTTTCTGGGAGAAAACAGTGATTCATTTGTATCTTGGCTGTGGGATCATCTTGATATGTATTTAGATTTGTATGTACAACCTGAAGCATTGCTGGATGATGCTCCTAAAAAACAGTTTACATCAGAGGTTCAAGCTGTGGCTGATGATTCTCAGCATTTAAATTCACAGTCGGAAAGAGTAAAATCTAGTAAGTTAACTAGAAGTCGGCATAACAAGGATTGGAAAGGATTGATGAGGGGAGAAGGAGAACCACCTCCCATTCGAAGCTCTGTGGTTGACAATGCTCATTTGGAGGAAAAAGCCCGACCTGAAGCCAATCATGGTACAAGGTCCCTATCTCCTAAGTCACCAGTTCAGAGGAAAAGGAGGCGAGCTGAGGAAAAACAGAGGACAAAGAGGGATGTTGTCTCACAAGTAAATGCTCCACGAAGGCTGCTTCAATTTGCAGTGCGAGATGCAGTTGCTACTTCCAGGACATCTAATTCAGGCATGTCGGTGGAGCCTTCCTTAAAACGTCTTCGTTCTGTAGTTTCTACCTCCACTGGTGATTCCTCTTTGGTTGAACGTCCACAGAGGATGCAACTTGCTTCCAGGGTGACAAATCCAATGGCTACAGTTATTAAGGCCGTGGCAGAAGCTGCTGAAGATGTGATAAAATCCAAGCCCTCTGGAAGTGTATTTGATAGACTTGGTCGTGGTATGGATACATTAGATGATAACAGGCAACTTGAAGATAGTTACCAGCATCTGGAGCAAACTCATTTATTTCATCCTCAAAGAACAGACTACAATGGGCAGTATGCTGCAAATATGACTATGATGGGACATGAAACTGGTTATCCTTCTGATTCTAATTCAGATAATGAAGGGTTTGATGATAATAATGTCATGGATCGTAGGGTGTCTGGAGCTTCTCAAATCAGCCCCTCTATTGGAAACAGGGGCAATAATTCACTGATGTTGCAGTATAGTGTAGCAAAAAATGTTGATGACAGTTTGCGCCAAAAATGGAATCGAGAACAGGAGCAACTTGCTGTTTCACCCAATACATCTCATAAGATAGTGAATATTTCTGTTAATGTAAATACATGGAAGCCACCACAACATCAGGAACCACGAGAGGTTACTGAAATAGATGGTAATAGAACTTTTTACAATGAAAGAGGAGATCCCAGATCTAGTATGCGGCTGGTGAAGGAGAATACCAACACTCTAAAAGTTAGTAATGGGAATGCAAACCCTGCTCTTGATGTTCAGAAAGAGTCTAGCAAGGCACACTTAACTGCTTCTGGTGTAGAATTGATTGCATCTTATGTATTCTCAGGTTCTAATGCTGCTGGTCGTCCTTCAGAAGATGTTGATTCCAGAACCATTTTTGTTAGCAATGTTCATTTTGCTGCCACCAAAGATGGCCTGTCTCGGCATTTTAATAGATTTGGGGAAGTTTTAAAAGTGATTATAGTCACTGATGCAGCAACAGGGCAACCAAAAGGCAGGGCAGCTTATGTTGAGTTCATGCGAAAAGAAGCGGCAGATAATGCATTATCACTGGATAACACTTCTTTCATGTCACGAATTCTCAAGGTTATTAAGAAAAGTGCTGCACATCAAGAATCAGCTCCAGCTATGGCATGGCCACGCATTGTTAGGGGTTCTCCATTCCCTTCTGCTAGGTTTTCCAGACATCCTTTTCCTCGAGGCATTCCTGGTGCGTTTAGAGCTCGACCCCCAATGAAACTGGGTGCCAGGAGCATGCAATGGAAGCGTGATGCTCAGGGATCTGACAGTAGTTCATCTGCGAATACAGGCAGTAGTATCGCTGCTCCTGTTGCTCGTGGATTCACCTACGTCAGAACAGAATCCAAGCCAGAAGGCAGCTTGGGCACGACCTAG 2220 0.4374 MAMGSDDRDDNRMIKANFTGDGAARLKESVMDKLKEFMGDYTDDTLVSLWFRHILDFAGKCSKSLDIAAKKLDVDTLCIMHTSIYKCDYVVVLLRNGRRKEQARNDLNVFLGENSDSFVSWLWDHLDMYLDLYVQPEALLDDAPKKQFTSEVQAVADDSQHLNSQSERVKSSKLTRSRHNKDWKGLMRGEGEPPPIRSSVVDNAHLEEKARPEANHGTRSLSPKSPVQRKRRRAEEKQRTKRDVVSQVNAPRRLLQFAVRDAVATSRTSNSGMSVEPSLKRLRSVVSTSTGDSSLVERPQRMQLASRVTNPMATVIKAVAEAAEDVIKSKPSGSVFDRLGRGMDTLDDNRQLEDSYQHLEQTHLFHPQRTDYNGQYAANMTMMGHETGYPSDSNSDNEGFDDNNVMDRRVSGASQISPSIGNRGNNSLMLQYSVAKNVDDSLRQKWNREQEQLAVSPNTSHKIVNISVNVNTWKPPQHQEPREVTEIDGNRTFYNERGDPRSSMRLVKENTNTLKVSNGNANPALDVQKESSKAHLTASGVELIASYVFSGSNAAGRPSEDVDSRTIFVSNVHFAATKDGLSRHFNRFGEVLKVIIVTDAATGQPKGRAAYVEFMRKEAADNALSLDNTSFMSRILKVIKKSAAHQESAPAMAWPRIVRGSPFPSARFSRHPFPRGIPGAFRARPPMKLGARSMQWKRDAQGSDSSSSANTGSSIAAPVARGFTYVRTESKPEGSLGTT 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0085 739 SUPERFAMILY RNA-binding domain, RBD 549 640 IPR035979 GO:0003676
Aed1g0085 739 MobiDBLite consensus disorder prediction 698 715 - -
Aed1g0085 739 Gene3D - 496 649 IPR012677 -
Aed1g0085 739 MobiDBLite consensus disorder prediction 228 243 - -
Aed1g0085 739 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 565 643 IPR000504 GO:0003723
Aed1g0085 739 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 14 3 47 IPR040366 GO:0008143|GO:0043488|GO:1900364
Aed1g0085 739 MobiDBLite consensus disorder prediction 154 246 - -
Aed1g0085 739 MobiDBLite consensus disorder prediction 264 298 - -
Aed1g0085 739 MobiDBLite consensus disorder prediction 154 170 - -
Aed1g0085 739 PANTHER RNA BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 87 732 - -
Aed1g0085 739 PANTHER RNA BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 3 47 - -
Aed1g0085 739 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 567 636 IPR000504 GO:0003723
Aed1g0085 739 MobiDBLite consensus disorder prediction 689 715 - -
Aed1g0085 739 MobiDBLite consensus disorder prediction 171 188 - -
Aed1g0085 739 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 14 87 732 IPR040366 GO:0008143|GO:0043488|GO:1900364
Aed1g0085 739 SMART rrm1_1 566 639 IPR000504 GO:0003723
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g0085 1 1887134 1894818 Aed1g0085 1 1887134 1894818 ECH
Aed1g0085 1 1887134 1894818 Aed4g1445 4 18985181 18988725 PCT