Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1377 ATGATCCAAGAACTGTTGGGTGGTAGTGCTAGCCTCATAGCAGGAGAAAGAAAAATCTCCATTAATAATAACGGAGGAGGAGCTGGAGCTGGAGCACTTCTACTAACACCACCCACTTCATCTTCTCCTTCTTGCACCACCACATCGAATTCAGAGAACCAAAGTTTGAGGTGCCCTCGTTGCGATTCTTCAAACACAAAGTTCTGTTACTACAACAACTACAACCTCACTCAGCCTCGCCACTTTTGCAAGACATGTCGCCGCTACTGGACCAAAGGTGGTGCTCTCAGGAATGTTCCCATCGGAGGTGGCTGCCGGAAAAGCAAAAGCTCCGGCATGTCCAACTCGGTGGCCAAGCAAACCGCCACAAAGATGAAAGCGGTGGTGGCATCAGAGCTTGGAAGGTCACAAGGACTCTTCGTCGACCAAGAGCTTCCACAAACCCAAGTCCTGTGGGGTTCTAGTTCTAGATCTCCGCAAAATTCTCAACTGATGGCTTTTCTAAGAGCTACCCAGAACCAAAACCCTAACCCTAACCCTAGTCCCATGTCAATTGCTGTCAAGGGAGAAGGGGACTTAGTGGGATCTCACTCCCACATGATGAGTACTGAGCCATTGCTCGCAAATCCTAGAACTAGTACTCTAGGCTATGATGGTGTGGGAGAAGTACTTCCTTCACTGGGTCTATGCAGCTCTTTTTGGAGGAACAATCAAGATCAGACTCAGCAACAAAGCAACGGTTTTGTACTTGGAGAACATCAAAGTAGTGGAGTTCAAGAACTTTACCACAAGCTCAGGTCATCAGTAAATTACTGTGGCAGTGATAACTCGCCTGCAGTGTTTATGGGTTCTTCTTCCTCTTCTTTGTCCAACATTCTGGAGTCATCTTCAGTTTCTGGGAGTGAATTCGGGTGCTGGAATCCAACTATTTCTTGGTCTGATCTTCCCACACCCAATGGAGCGTATCCTTGA 972 0.4753 MIQELLGGSASLIAGERKISINNNGGGAGAGALLLTPPTSSSPSCTTTSNSENQSLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKSKSSGMSNSVAKQTATKMKAVVASELGRSQGLFVDQELPQTQVLWGSSSRSPQNSQLMAFLRATQNQNPNPNPSPMSIAVKGEGDLVGSHSHMMSTEPLLANPRTSTLGYDGVGEVLPSLGLCSSFWRNNQDQTQQQSNGFVLGEHQSSGVQELYHKLRSSVNYCGSDNSPAVFMGSSSSSLSNILESSSVSGSEFGCWNPTISWSDLPTPNGAYP 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1377 323 ProSitePatterns Zinc finger Dof-type signature. 58 94 IPR003851 GO:0003677|GO:0006355
Aed11g1377 323 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 42 321 IPR045174 GO:0003700|GO:0006355
Aed11g1377 323 ProSiteProfiles Zinc finger Dof-type profile. 56 110 IPR003851 GO:0003677|GO:0006355
Aed11g1377 323 Pfam Dof domain, zinc finger 54 110 IPR003851 GO:0003677|GO:0006355
Aed11g1377 323 PANTHER F-BOX FAMILY PROTEIN 42 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1377 Aed-Chr11 18449089 18450060 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1377 52 168 C2C2-Dof Transcription Factor Family AT1G51700 51.667 3.45e-34 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Aed11g1377 zf-Dof 1.6e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1377 - - gmx:778100 472.241