Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1234 ATGCGAACGCTTTGTGATGCTTGTGAGAGCGCGGCGGCTATAGTTTTCTGCGCCGCTGATGAGGCTGCACTCTGTCGTGCCTGTGATGAGAAGGTTCACATGTGCAATAAGCTAGCTAGTAGGCATGTGAGGGTTGGTCTTGCAAGTCCAAGTGATGTGCCACGGTGTGACATATGTGAGAATGCACCTGCTTTCTTCTATTGCGAGACAGATGGAAGTTCCCTTTGTTTGCAGTGTGATATGATAGTTCATGTTGGAGGAGATAAATCTAGTCATGGTGAAAATCCAGGTTCACAACCATTGGAACCAAGTGAGACTAAAAGAGGACAAAATCCACTTCCCAAACTAAAAATGGGAGGAGAGAAGCAACAAAATCACAGGATGCCTATGGTTCCAACGCCAGGACCTGATGCTGATGGACATAACAAGATGGAAACTAAAATGATTGATTTGAACATGAAGCCTAATAGAATACATGAACAAGCATCAAATAATCAGCCATAA 504 0.4405 MRTLCDACESAAAIVFCAADEAALCRACDEKVHMCNKLASRHVRVGLASPSDVPRCDICENAPAFFYCETDGSSLCLQCDMIVHVGGDKSSHGENPGSQPLEPSETKRGQNPLPKLKMGGEKQQNHRMPMVPTPGPDADGHNKMETKMIDLNMKPNRIHEQASNNQP 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1234 167 MobiDBLite consensus disorder prediction 87 143 - -
Aed11g1234 167 CDD Bbox1_BBX-like 4 47 - -
Aed11g1234 167 Gene3D Classic Zinc Finger 2 91 - -
Aed11g1234 167 SMART bboxneu5 51 97 IPR000315 GO:0008270
Aed11g1234 167 SMART bboxneu5 1 47 IPR000315 GO:0008270
Aed11g1234 167 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 166 - -
Aed11g1234 167 ProSiteProfiles Zinc finger B-box type profile. 51 97 IPR000315 GO:0008270
Aed11g1234 167 SUPERFAMILY B-box zinc-binding domain 48 86 - -
Aed11g1234 167 Pfam B-box zinc finger 3 42 IPR000315 GO:0008270
Aed11g1234 167 Pfam B-box zinc finger 52 85 IPR000315 GO:0008270
Aed11g1234 167 MobiDBLite consensus disorder prediction 92 106 - -
Aed11g1234 167 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Aed11g1234 167 PANTHER SALT TOLERANCE-LIKE PROTEIN 1 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1234 Aed-Chr11 17528833 17531821 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Aed11g1234 zf-B_box 2.9e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1234 11 17528833 17531821 Aed11g1234 11 17528833 17531821 ECH
Aed5g0358 5 2510360 2513698 Aed11g1234 11 17528833 17531821 ECH
Aed9g0087 9 630670 631392 Aed11g1234 11 17528833 17531821 ECH