Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1024 ATGTCAGCGTTGTTTATATCTTTCATTTATTTATCAAAACAAGGTAAACGCTTACTAGCCAATCCAACCTATAAAAGTGTCTCCTATCATTGGAGTGGCGAGGAGGAGTTAGTGCATTCTTGTTTGTTCTGTATTGTCGAGGAGGCCAAAGACGACGAGACCCTAATACCCAACACAAGCCCTGAAACTGAAAGTGTCTCTTATCTCACTGTTCCTGTGATTTTGATCTCCAACATCAAATTCCTCATGGCCAATACATCAGATCCCGAAGCTGGTGCTGCTACTGCTGTGCCACTTCCCCGAGTTGGGAAGAGAGAGGGTGAGAATGAAGATGAGCATCAAGTGAATGCAAAGAAGCAGAAGAGAGATGATGTGGTTGCAGAGGAGCAAAGGAATGAGGATGAAATTGTTTCAGATGATACATTTGCAGATTTTGAACCAGATAAGAATCCTGAAGCTAAAAATGACTCCCTCAGTAAACAGGAGAAGAAAGGCAAACCTGATAGTGCTAACTGTTCCAGTTCTTTGGAGTCATTGGCTGATGGTTCTGAGGAGGATGAAGGGAATATGGATATTGATGAGGGTGATAATTCTGAAGAACGTAATGAAGAAACACAAGAGAAGATGGAAGTATTGATGGGTGTTGCATCAAATGCTCAAGAATGTGATTTAAAATATGTTGAAAATGATTCTTTTAGTGATAGTTCAGATGATGACAACCCTGTAAAAAGTTCAGATAACAGTGAGGAAGGAATTGAAGAAAAAGACTCTAAAACTCCTCAAGAAAATCCTAAAATGCTAGCTACACCACGATATGAACGATATCCTGGATCGAAGACAGTTGTTACTAGAAACTTATCATACAGTGTGGAACGAGCTGATTTGGAAAATCTTTTCAAAGTGTGTGGAGAAATTGTTGATGTTCGTCTACATACGGATGTTGAAGGGAGGTTTAGAGGCTTTGGACATGTTGAGTTTGCAACAGCAGAAGCAGCACAAAAAGCTCTTCAGTTAAGTAATACAGAATTGTTAAGATGTCGCATCAGAGTTTGTATAGCTCCACCAAAGCATAAGCATACCCCCAATAGAAGGTCAGCGAAATCCATGGATGCGGCAAGTTTCCATGTTAATTCTAGCTACATGAGTCACTCATTTCAAAGAAGTGAAGGAACTCAGCTTATGAAAGGTTCAGAGATTTCAGGGGACTGTGAACAAGAAACTGAGCCAAAAATAATTGCTACTTGTGAAGAACAAAGTGCTACATCAAAGACAATATATGTTAAAAACTTGTCATACAGTATGAAGCAGGGTGATATGGAATTTCTTTTCAAAAAGTGTGGAGAAATTGTTAATATCCGCCTACATACAGATCATAGAGGGTGGTTTAAAGGCTATGGACATGTTGAGTTTGCAACCAAAGAAGCTGCACAAAAAGCTCTTGAATTGAATAATACAGTATGTTTGGGGCGCCACATTGGAGTTTATAGAGCTAAAGGAAATGGTGAATATACCTCCAATAGAAGCAGCTGGAGCAAGTCATTCCATGAGAGTGAAAGAACTATGCCCATCAAAAGTACAGAGAGTTCAGGGTACTGTGAGGAAGAGGTTGGGGGAAAAGCCTCCAATAGTTCTTCGGAAAGTTCTAAAAGGTTAGCTACGCTGAAAGAACAAAATGCTCCACCAAAGACGATATATGTCAGAAACTTGTCATACAGAGTGGAACGGGCTGATATGGAAAATCTTTTCAAAGAATGTGGAAAAATTGTTGATGTTCGTCTACATAGGGATCATGATGGGAGGTTTAATGGCTTTGGACATGTTGAGTTTGCAACAGCAGAAGCTGCACAAAAAGCTCTTGATTTGCATAATACAGAATTGTTGAGACGTCCAATCAGAGTTGATTTGGCTGAAGAAATAGGTGAATATACATACAGTAGAAGCAACTGGAGCAATTCATTCCAGAATTGTGAAAGAAGTCAGTCTCCAACTCTATTTGTGACGGGTTTTGATTGTTCCCTTCCATCAGAAAAGATAAAAGCTAGACTAGAAGAACATTTTGGTTCTTGTGGAGAGATTCAAAGGATATCAGTTCCGACATTTCATGATTCTGGTGCTGTTAAGGGGTTTGCTCACTTGGAGTTCAAGGATGTTGTCAGTTTGAGGAATGCTCTACATCTTGAGAGTTTCCCCTTGAGAGTTGAAAAAGCAAGGACTCGACGTTATAACCAGGGTACAGGTGATGGCAGCGGTGGCGATGGTCATGAGTTTGGTGGAAGGGATGGAAGTGACTATACCAGCAGAGTGAGTTGGGGGAGAAGTGGTGGTGGTGGGTGGCATTCTCTTCATTTTTCTGATGAAGGCACAGCTGGACATCCTCACATTCACATCATTCATGTTCATGGAGGAAGAACCACTTTTACTGATGATGACTATTGCAGCAGATGTTGGAAACTTTGGGTGGGAACTTTTATTCGAAAGTTGTTCTGCAGGAAATACTTGCAGATTTTGTTGTGGAAAATAATCCGCAGCTTCACGTTTGTACATGGAGTCCTAACTCGCATTCGTTCCGGTGTCAGTCAGAGCAGAAAAGGACTCGTTGGTGCTCATTATATAAAGCTGAGAAGTGTCACTCGTTTGTCATTTTTCATTCAGAGCTTCGTTAGATTTGTGGCAAAGGTGACAATGGAAGATTGGGCTTCGTTGTGGCGTGCTTCAACCCAATTGCAGAACTCAGGGACTGTGATTATGCCGCTTGCTTGCCAGGTGTCTAATTTATATGAAGAGAACACGTTAGTGCATATATTAAGCCTTGCTGGAGTGTAA 2823 0.4088 MSALFISFIYLSKQGKRLLANPTYKSVSYHWSGEEELVHSCLFCIVEEAKDDETLIPNTSPETESVSYLTVPVILISNIKFLMANTSDPEAGAATAVPLPRVGKREGENEDEHQVNAKKQKRDDVVAEEQRNEDEIVSDDTFADFEPDKNPEAKNDSLSKQEKKGKPDSANCSSSLESLADGSEEDEGNMDIDEGDNSEERNEETQEKMEVLMGVASNAQECDLKYVENDSFSDSSDDDNPVKSSDNSEEGIEEKDSKTPQENPKMLATPRYERYPGSKTVVTRNLSYSVERADLENLFKVCGEIVDVRLHTDVEGRFRGFGHVEFATAEAAQKALQLSNTELLRCRIRVCIAPPKHKHTPNRRSAKSMDAASFHVNSSYMSHSFQRSEGTQLMKGSEISGDCEQETEPKIIATCEEQSATSKTIYVKNLSYSMKQGDMEFLFKKCGEIVNIRLHTDHRGWFKGYGHVEFATKEAAQKALELNNTVCLGRHIGVYRAKGNGEYTSNRSSWSKSFHESERTMPIKSTESSGYCEEEVGGKASNSSSESSKRLATLKEQNAPPKTIYVRNLSYRVERADMENLFKECGKIVDVRLHRDHDGRFNGFGHVEFATAEAAQKALDLHNTELLRRPIRVDLAEEIGEYTYSRSNWSNSFQNCERSQSPTLFVTGFDCSLPSEKIKARLEEHFGSCGEIQRISVPTFHDSGAVKGFAHLEFKDVVSLRNALHLESFPLRVEKARTRRYNQGTGDGSGGDGHEFGGRDGSDYTSRVSWGRSGGGGWHSLHFSDEGTAGHPHIHIIHVHGGRTTFTDDDYCSRCWKLWVGTFIRKLFCRKYLQILLWKIIRSFTFVHGVLTRIRSGVSQSRKGLVGAHYIKLRSVTRLSFFIQSFVRFVAKVTMEDWASLWRASTQLQNSGTVIMPLACQVSNLYEENTLVHILSLAGV 940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1024 940 SUPERFAMILY RNA-binding domain, RBD 274 365 IPR035979 GO:0003676
Aed11g1024 940 MobiDBLite consensus disorder prediction 91 207 - -
Aed11g1024 940 MobiDBLite consensus disorder prediction 502 555 - -
Aed11g1024 940 MobiDBLite consensus disorder prediction 538 554 - -
Aed11g1024 940 Gene3D - 644 777 IPR012677 -
Aed11g1024 940 MobiDBLite consensus disorder prediction 229 274 - -
Aed11g1024 940 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 279 355 IPR000504 GO:0003723
Aed11g1024 940 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 142 497 - -
Aed11g1024 940 SUPERFAMILY RNA-binding domain, RBD 651 763 IPR035979 GO:0003676
Aed11g1024 940 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 284 348 IPR000504 GO:0003723
Aed11g1024 940 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 564 632 IPR000504 GO:0003723
Aed11g1024 940 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 673 724 IPR000504 GO:0003723
Aed11g1024 940 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 425 491 IPR000504 GO:0003723
Aed11g1024 940 Gene3D - 375 505 IPR012677 -
Aed11g1024 940 Gene3D - 506 643 IPR012677 -
Aed11g1024 940 MobiDBLite consensus disorder prediction 229 261 - -
Aed11g1024 940 Gene3D - 238 369 IPR012677 -
Aed11g1024 940 SUPERFAMILY RNA-binding domain, RBD 555 650 IPR035979 GO:0003676
Aed11g1024 940 CDD RRM1_NUCLs 563 638 IPR034349 -
Aed11g1024 940 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 142 497 - -
Aed11g1024 940 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 528 656 - -
Aed11g1024 940 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 665 788 - -
Aed11g1024 940 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 528 656 - -
Aed11g1024 940 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 665 788 - -
Aed11g1024 940 SMART rrm1_1 424 495 IPR000504 GO:0003723
Aed11g1024 940 SMART rrm1_1 663 734 IPR000504 GO:0003723
Aed11g1024 940 SMART rrm1_1 563 634 IPR000504 GO:0003723
Aed11g1024 940 SMART rrm1_1 280 351 IPR000504 GO:0003723
Aed11g1024 940 MobiDBLite consensus disorder prediction 180 200 - -
Aed11g1024 940 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 662 738 IPR000504 GO:0003723
Aed11g1024 940 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 562 638 IPR000504 GO:0003723
Aed11g1024 940 SUPERFAMILY RNA-binding domain, RBD 417 510 IPR035979 GO:0003676
Aed11g1024 940 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 423 499 IPR000504 GO:0003723
Aed11g1024 940 MobiDBLite consensus disorder prediction 103 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1024 Aed-Chr11 16054612 16071963 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1024 425 739 Eukaryotic Initiation Factors Gene Family AT4G34110 24.458 2.00e-15 79.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1024 11 16054612 16071963 Aed11g1024 11 16054612 16071963 ECH