Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g0867 ATGTTGGCCTCCACTATCCTAACGCCCTCGAAGCTCAACCCTCCGCATTTCGTTCCACCCGTCGCAGTCGCAGAAACTCACCCTAGAAACAGAGTCGCAATCTTTCCCAAATCTAACTCCAAACACGCTTTCGTTGCCAGGGCCAGTGGTAACGTCCATGACGGCGGCGCCGTAGACGCCACCTCTCCCTCGGGCATTGATGCATTAACAACTACATCTTCTGGCCTTGGTGATGGTTATGTGGCCTTGTTTGTTCGTATGTTAGGCCTTGATCGTGATCCTCTGGATAGAGAACAAGCTGTAGTTGCTCTCTGGAAATATTCGCTTGGTGGAAAGAAGTGTATTGACACTTTAATGCAGTTTCCTGGTTGTATTAATCTTGTTGTGAACCTCCTCAGATCAGAGTCTAGTTCAGCATGTGAGGCTGCTGCGGGCCTTCTGCGATCACTATCTTCAGTCAATCTATATAGAAATTCTGTAGCTAATAGTGGAGCAATAGAAGAGATAAACAGATTGCTGAGGAAATCTTCCTTGGCTCTTGAGGTAAAGGAGCAGAGTTTGAGTACACTGTGGAATTTATCTGTTGATGAGAATCTCTGCATTAAAATTTCAAAGACTCAGGTTCTGCCATTAGCTATTAAGTACCTTGACGATGAGGATATAAAAGTGAAGGAGGCTGCTGGGGGCATTTTGGCAAATTTAGCATTGAGCCGAGCTAACCACAACATCATGGTTGAAGCAGGTGTTATACCAAAATTGGCAAAGTTCTTAACATCTAATTCAGCTGGATCTAAAGTTATTAGAAAGGAAGCAAGGAATGCATTGTTGGAGCTTGTTAAGGACAACTATTATAGAATTCTTGTTATTGAGGAAGGTCTGGTCCCTGTGCCATTAATTGATGCTGCAGTCTTTAAGTCATTCACCCTGGGCTCACATCTGTGGCCCACGTTACCTGATGGTACAGAAATTGAAAGAACTTCTAGACAGCCATCCAGGTATGGTGCTTCGGAATTACTTCTTGGATTAAATATTAATGACAGGAATGCTAACTTAGAGGAAGCAAAAGTCAATGCAATTGTTGGACGAACACAACAGCAGTTCCTTGCTCGTGTTGGGGCTTTAGAAATGGAAGAAAAGACTATGCCTCATTCTGAATGCTCAAATGATCAGAGGTTTACACTTTTATCTTGGATGGATGGTGTTGCTCGTTTAGTACTGCTACTAGAACTGGAAGATAAGTCTGCGATAATAAAGGCTGCAGAGTCAATTGCTACTGCATCTATCAATGAACATATGCGTATTGCATTCAGGGAAGCTGGAGCGACTAAGCATTTAGTAAGGCTTTTGAATTGTGATGATAATGCAGTCCAGTTGGCAGCTACTCAAGCTTTGGAGAGACTGTCTGTTAGCAATATTGTTTGCGGGGTCATTGAAGCTGAGGGGGTTTTAGGACCTTTAGTTAGTATTTTGAAATGCTCAGAGATAGCTGGAACTGTTGTGGAGAAGTCTTTGAACATACTTGCCCGGATATTAGACCCCAGTAAAGAGATGCAATTAAAGCTTTATGATGGACCAGTTAATGGATCTGAAAAGGCACTTGGTGGAGCAAAAGGTGACTGTGTTTCAACTGGGTTTAGTAGCACTGAACAAGCTATATCAAAAACATACACAAGGAATGATATACTGGATTCTGTTTTCATTGCACACCTGGTTGAAATTCTGAAGTCCTCTCCTCCCAGTTTACAAGAAAAAGCTGCTACTGTGCTTGAGTTTGTGGCATTGACTGACCCAACTCTGGCCCCAATTATATCTTTGGATATTGAATCTGGTCTCAATTCTGCTTTTCAGCAAAAAATTTTGAAAATTTCAGCTGACATGGAATCCGACGCAGAACATCAATTTTCTGAAGCATACGCAATTGAATTTGAAGAAGCTGGTCTTGCAATATCCACAGCGTCCCGGTTATTGACAAGACTACTTGATCACAAGCAGTTCCGTGACAAAATAAACTCCTCGCATTTCATCGATCTGCTTCGTGAAATCCTCAGATCCAGGATTCCCCTCCACAGCAAAGAGTGTGTAGCTGCTTGCCTAGTTAAACTAAGCTCTCTCTCCGGCTCTTCCATCACAAGCCTCTATCCAATCAACGTGGAAGTTACACTCTACGAGACGATCCCAAGACTTCTGGAACGAATCAAAGGTTCATTCTCCCCAGAAGTGCAGGAAACTGCTGTTGTTGAACTCGACAGAATAATATCTGAAGGAGTGGTGGATGATTCTTACACAGAGGCTATTGTTTCTGACGAAGCACTGTATTCATTGGTGAATTTGATTGAAGAGGGAAGTGATAGGGCTGTTGAAGCAAGCTTGGCAATACTGAAGAATCTGAGTTTGGACAGTGAGAACCATTCAGCACTTGTGGCTGCTGGAGCAGTGCAGGTCTTGAAAAGGATTGTTCTAGCAAATAGACCACACTGGGAACGTGCACTTCTTTTACTCAGGATTTTGCAACCTTGA 2517 0.4299 MLASTILTPSKLNPPHFVPPVAVAETHPRNRVAIFPKSNSKHAFVARASGNVHDGGAVDATSPSGIDALTTTSSGLGDGYVALFVRMLGLDRDPLDREQAVVALWKYSLGGKKCIDTLMQFPGCINLVVNLLRSESSSACEAAAGLLRSLSSVNLYRNSVANSGAIEEINRLLRKSSLALEVKEQSLSTLWNLSVDENLCIKISKTQVLPLAIKYLDDEDIKVKEAAGGILANLALSRANHNIMVEAGVIPKLAKFLTSNSAGSKVIRKEARNALLELVKDNYYRILVIEEGLVPVPLIDAAVFKSFTLGSHLWPTLPDGTEIERTSRQPSRYGASELLLGLNINDRNANLEEAKVNAIVGRTQQQFLARVGALEMEEKTMPHSECSNDQRFTLLSWMDGVARLVLLLELEDKSAIIKAAESIATASINEHMRIAFREAGATKHLVRLLNCDDNAVQLAATQALERLSVSNIVCGVIEAEGVLGPLVSILKCSEIAGTVVEKSLNILARILDPSKEMQLKLYDGPVNGSEKALGGAKGDCVSTGFSSTEQAISKTYTRNDILDSVFIAHLVEILKSSPPSLQEKAATVLEFVALTDPTLAPIISLDIESGLNSAFQQKILKISADMESDAEHQFSEAYAIEFEEAGLAISTASRLLTRLLDHKQFRDKINSSHFIDLLREILRSRIPLHSKECVAACLVKLSSLSGSSITSLYPINVEVTLYETIPRLLERIKGSFSPEVQETAVVELDRIISEGVVDDSYTEAIVSDEALYSLVNLIEEGSDRAVEASLAILKNLSLDSENHSALVAAGAVQVLKRIVLANRPHWERALLLLRILQP 838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g0867 838 Pfam Armadillo/beta-catenin-like repeat 429 468 IPR000225 GO:0005515
Aed11g0867 838 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 21 837 - -
Aed11g0867 838 SMART arm_5 196 236 IPR000225 GO:0005515
Aed11g0867 838 SMART arm_5 111 152 IPR000225 GO:0005515
Aed11g0867 838 SMART arm_5 429 469 IPR000225 GO:0005515
Aed11g0867 838 SMART arm_5 758 798 IPR000225 GO:0005515
Aed11g0867 838 SMART arm_5 153 195 IPR000225 GO:0005515
Aed11g0867 838 SMART arm_5 237 280 IPR000225 GO:0005515
Aed11g0867 838 SMART arm_5 554 594 IPR000225 GO:0005515
Aed11g0867 838 Gene3D - 77 305 IPR011989 -
Aed11g0867 838 SUPERFAMILY ARM repeat 84 512 IPR016024 -
Aed11g0867 838 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 769 811 IPR000225 GO:0005515
Aed11g0867 838 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 207 249 IPR000225 GO:0005515
Aed11g0867 838 Gene3D - 383 613 IPR011989 -
Aed11g0867 838 Gene3D - 644 837 IPR011989 -
Aed11g0867 838 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 123 165 IPR000225 GO:0005515
Aed11g0867 838 SUPERFAMILY ARM repeat 400 819 IPR016024 -
Aed11g0867 838 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 164 197 IPR000225 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g0867 123 263 U-box Gene Family AT3G46510 32.394 1.54e-09 59.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g0867 11 13610197 13623984 Aed11g0867 11 13610197 13623984 ECH