Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g0717 ATGTTTTTCGCCTTTCAAATAAAACGAGATTCTGCTCACAGTCGTTTTGGGGCATTCTTAATCTTGCGTACTCAGTTGTTACTCTCTCTAGAGCGTCGTCGTTTCGTTAGGGCACAAAACCCCTTTTCGGATCGGTGGAGCGAAGCCTCGCCGGCGAGATTCCCGAGGCTGGTTCAATCGGCGATCGAGCACCGGCGAAAGATGAAGGTTTTCGTGAAGACTCTCAAGGGAACGCACTTCGAAATTGAAGTGAACCCCTCGGACATGCTTTCTGAAGTCAAGAAAAAGATAGAAACTGTTCAGGGTGCAGATGTCTATCCTGCTGCGCAGCAAATGCTTATTCATCAAGGAAAAGTTCTAAAGGATGGTACTACTTTGGAGGAAAATAAAGTAGCTGAAAATAGTTTTATTACTAAGACTTCATCTGGTGAAGGATCTACTACTTCCGCTGCACCTTCAGCTAAGACAAGTGCAACTCCTACTTCAACCTCTGTCTCTGCTGCACCTCAAGCTCCTGCTTTAACTGAAGCAACGCCTACACCTGTTACTACCCCAGCAGCTGCTCCTGCTCCTGCACCAGCTCCTGCTCCTATATCTTCAGGCTCTGCTGTGCCAGGGTCTGATGTATATGGGCAGGCAGCATCCAATCTTGTTGCTGGAACTAACTTGGAGGAAATAATTCAGCAAATCCTTGACATGGGTGGAGGAAGCTGGGACAGGGATACTGTTGTTCGTGCTCTTCGTGCTGCTTATAACAACCCTGAGAGAGCTGTTGAATATTTGTATTCCGGTATACCAGAGCAAGCTGAAGCTCCACCTGTTACCCGAGTGCCGGCAAGTGCTCAACCTGCAAATCCTCCAGCTGCTGCTCCACTGGCAGCACAACCAGCATCTCTTCCTTCTACTGGACCTAATGCTAATCCTTTAGACCTCTTTCCCCAGGGCCTTCCCAATGTTGGGTCTGGTGCTGCTGGTGCTGGCTCTTTAGACTTTCTTCGCAACAGTCAACAGTTCCAAGCCTTACGCACTATGGTACAGGCTAATCCACAAATATTGCAGCCTATGCTACAAGAGCTTGGCAAACAAAATCCTCATCTTATGCGATTGATTCAAGAGCATCAAGTTGATTTCCTTCGCCTAATTAATGAACCCGTTGAAGGGGGTGAGGGAAATTTACTTGGACAGCTGGCTGGTGCCATGCCACAAGCAGTGACTGTCACCCCTGAGGAGCGGCAAGCAATTGAACGTCTCGAAGCAATGGGTTTTGATCGTGCTACAGTATTGGAGGTATACTTTGCTTGTAACAAAAACGAGGAATTGGCTGCCAACTACCTTTTAGATCACATGCATGAGTTTGATGAATAA 1365 0.4747 MFFAFQIKRDSAHSRFGAFLILRTQLLLSLERRRFVRAQNPFSDRWSEASPARFPRLVQSAIEHRRKMKVFVKTLKGTHFEIEVNPSDMLSEVKKKIETVQGADVYPAAQQMLIHQGKVLKDGTTLEENKVAENSFITKTSSGEGSTTSAAPSAKTSATPTSTSVSAAPQAPALTEATPTPVTTPAAAPAPAPAPAPISSGSAVPGSDVYGQAASNLVAGTNLEEIIQQILDMGGGSWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEAPPVTRVPASAQPANPPAAAPLAAQPASLPSTGPNANPLDLFPQGLPNVGSGAAGAGSLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQVDFLRLINEPVEGGEGNLLGQLAGAMPQAVTVTPEERQAIERLEAMGFDRATVLEVYFACNKNEELAANYLLDHMHEFDE 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g0717 454 Gene3D - 402 449 - -
Aed11g0717 454 Pfam XPC-binding domain 329 384 IPR015360 GO:0003684|GO:0006289|GO:0043161
Aed11g0717 454 SMART uba_6 223 263 IPR015940 -
Aed11g0717 454 SMART uba_6 410 447 IPR015940 -
Aed11g0717 454 SUPERFAMILY UBA-like 390 453 IPR009060 GO:0005515
Aed11g0717 454 SUPERFAMILY XPC-binding domain 326 391 IPR036353 GO:0003684|GO:0006289|GO:0043161
Aed11g0717 454 Gene3D - 62 141 - -
Aed11g0717 454 MobiDBLite consensus disorder prediction 275 303 - -
Aed11g0717 454 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 221 264 IPR015940 -
Aed11g0717 454 MobiDBLite consensus disorder prediction 184 198 - -
Aed11g0717 454 SUPERFAMILY UBA-like 221 275 IPR009060 GO:0005515
Aed11g0717 454 MobiDBLite consensus disorder prediction 136 203 - -
Aed11g0717 454 PANTHER UV EXCISION REPAIR PROTEIN RAD23 68 453 - -
Aed11g0717 454 PRINTS DNA repair protein Rad23 signature 355 377 IPR004806 GO:0006289
Aed11g0717 454 PRINTS DNA repair protein Rad23 signature 404 420 IPR004806 GO:0006289
Aed11g0717 454 PRINTS DNA repair protein Rad23 signature 421 435 IPR004806 GO:0006289
Aed11g0717 454 PRINTS DNA repair protein Rad23 signature 436 451 IPR004806 GO:0006289
Aed11g0717 454 CDD Ubl_Rad23 68 138 - -
Aed11g0717 454 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 407 448 IPR015940 -
Aed11g0717 454 SMART CBM 327 370 IPR006636 -
Aed11g0717 454 ProSiteProfiles Ubiquitin domain profile. 68 146 IPR000626 GO:0005515
Aed11g0717 454 SMART ubq_7 68 142 IPR000626 GO:0005515
Aed11g0717 454 Gene3D - 216 266 - -
Aed11g0717 454 MobiDBLite consensus disorder prediction 136 182 - -
Aed11g0717 454 Gene3D - 320 385 IPR036353 GO:0003684|GO:0006289|GO:0043161
Aed11g0717 454 CDD UBA1_Rad23_plant 217 266 - -
Aed11g0717 454 PANTHER UV EXCISION REPAIR PROTEIN RAD23-RELATED 68 453 - -
Aed11g0717 454 SUPERFAMILY Ubiquitin-like 68 145 IPR029071 -
Aed11g0717 454 Pfam UBA/TS-N domain 410 445 IPR015940 -
Aed11g0717 454 Pfam UBA/TS-N domain 223 261 IPR015940 -
Aed11g0717 454 TIGRFAM rad23: UV excision repair protein Rad23 68 453 IPR004806 GO:0006289
Aed11g0717 454 Pfam Ubiquitin family 70 138 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g0717 Aed-Chr11 8673035 8688894 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g0717 68 135 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 42.647 4.95e-09 52.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g0717 11 8673035 8688894 Aed11g0717 11 8673035 8688894 ECH