Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g0654 ATGCAATTTGCTGAGAAAATGCAACCCTTGAAAATGGGGTTCCGTGAGTACATCGAAGCATTGGAGGAAGAAAGGAGGAAAATTCAAGTTTTCCCTAAAGAGCTTCCTTTGTCATTAGAGCTTGTCACGCAAGCGATTGAGGGGTGTAGACAGCAATTGTCTGGGACGGTTGCTGAGTACAATTTGAATGGCCAATCGGAGAAAACTAATGTTGTGGAAGTGAAGAGAAACAACGGTGGAGCATTCCAACCGTTCCAAAGAGAGGAAAAAAGTGTTGTTGTTGTTGGAAAGACTAATAATAATGAATCAGCAATTGGTAAAGCAGCACCTTCTTCACCACCAGTGCCTGCTACTACAAGTTCTTCTACAGAACCAGAGATGAGAGTCGTAGTGAGCAAAAAAGAGGAGAAAGGATCACAAGCTCAGAGAAAGCAACGCAGGTGTTGGTCACAGGAATTGCACAAGCGATTCTTGCATGCACTTCAACAACTTGGGGGTTCAGATTCTGCCACGCCCAAACAGATCAGGGAGCTAATGAAGGTTGATGGTCTCACCAACGATGAAGTCAAAAGTCATTTACAGAAATTTCGTCTTCACACAAGAAGAAGCCCCATAATCCACCACAACAATGCAGGTTCACATTCACAAGCAGCAGGGCCTTTGTTTCTTGTGGGGAATATTTTTGTGCAGCCGCCAGAATATTCTGCTGCTACTACTACTACTACCTCAACAACATCTGGAGGAGAATTGACCACACTTACTACTAATAATAATAATATTGCTCCATCTGGAATCTATGCACCTGTGGCTTCACACCCTCCAACTGTTATGAAGAAGCAACATTCACATTCACATTCTGAAGAAAGGGCTAATAATCATAGTGTTCATTCAAACTCCCCTGCCTCATCATCCTCCACCACACATACCATCACAACTTCAACCTTCACTACCTGCCCTTAA 960 0.4333 MQFAEKMQPLKMGFREYIEALEEERRKIQVFPKELPLSLELVTQAIEGCRQQLSGTVAEYNLNGQSEKTNVVEVKRNNGGAFQPFQREEKSVVVVGKTNNNESAIGKAAPSSPPVPATTSSSTEPEMRVVVSKKEEKGSQAQRKQRRCWSQELHKRFLHALQQLGGSDSATPKQIRELMKVDGLTNDEVKSHLQKFRLHTRRSPIIHHNNAGSHSQAAGPLFLVGNIFVQPPEYSAATTTTTSTTSGGELTTLTTNNNNIAPSGIYAPVASHPPTVMKKQHSHSHSEERANNHSVHSNSPASSSSTTHTITTSTFTTCP 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g0654 319 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 3 62 IPR044787 GO:0003700|GO:0006355
Aed11g0654 319 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 67 312 - -
Aed11g0654 319 MobiDBLite consensus disorder prediction 293 319 - -
Aed11g0654 319 Gene3D - 143 201 - -
Aed11g0654 319 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 144 199 IPR006447 GO:0003677
Aed11g0654 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 141 201 IPR017930 -
Aed11g0654 319 MobiDBLite consensus disorder prediction 102 127 - -
Aed11g0654 319 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 67 312 IPR044787 GO:0003700|GO:0006355
Aed11g0654 319 MobiDBLite consensus disorder prediction 237 319 - -
Aed11g0654 319 SUPERFAMILY Homeodomain-like 142 202 IPR009057 -
Aed11g0654 319 Pfam Myb-like DNA-binding domain 146 195 IPR001005 -
Aed11g0654 319 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 3 62 - -
Aed11g0654 319 MobiDBLite consensus disorder prediction 237 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g0654 Aed-Chr11 6894434 6897628 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g0654 16 306 G2-like Transcription Factor Family AT1G13300 38.769 8.94e-46 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Aed11g0654 Myb_DNA-binding 5.9e-06 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g0654 11 6894434 6897628 Aed11g0654 11 6894434 6897628 ECH