Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g0653 ATGCAAGCTCATCCCCCTTTCTCCTCCTACATATCCTCATTGAACCCTCATCATCACCACCATCATCATGAGTTTGTGGATGATGAAGCCTCCATCTCCCTCTCTCTTGGCCTTCCTGGCCAACAACACAACAACAAAACTTCTCACCATTTCCAGCAAAACCCTATTACTACTGCTGCCGCCACTACCATCTCTGATGTAACTGTAGCACTTCACATTGGACTTCCCTGCAGTTCCACCACCACAACAACCACTACCTCATCACCTGATAACAGTGCCATCGCCACCACCACAACAGCAACAACAACTAGGAATGATAATAATAATAAGGCTGATCATCATCATCATCATCATCATAATAATCTTCATTTGGCCTCTTCCCCCAACAACAACATTAATCAGCAGGGCCAGTACTGGATCCCTTCTCCTGCTCAAATCCTCATTGGACCCACCCAGTTCTCTTGCACTGTCTGCAACAAAATGTTCAACCGTTTCAACAACATGCAGATGCACATGTGGGGGCACGGCTCGCAATACCGAAAGGGCCCGGAGTCCCTGCGGGGCGCGAAGCCCGCCTCCTCAATGCTAAGGCTCCCCTGCTACTGCTGTGCGGATGGCTGCAAGAACAACATCGCCCACCCGCGTTCCCGGCCGCTGAAGGACTTCCGAACGCTCCAGACGCACTACAAGCGGAAGCACGGCGCGAAGCCGTTTGGGTGCCGGAAGTGCGGGAAGCCCTTCGCCGTGAGGGGCGACTGGAGGACGCACGAGAAGAACTGCGGGAAGCTCTGGTTCTGCATCTGCGGCTCCGACTTCAAGCACAAGAGGTCACTCAAGGACCACGTGCGTGCGTTCGGCGACGGCCACGCGCCGCACACGGTGGAGAGCTGTGACAACGACGATCGGATGGGTGGGGAGGATGAGTTGCTGTTGCTGGGCGATGAGGATGATGATGAAGAGGAGGGGATGGAGGTTGATGATGATATGGATGAGGATTATCATAGTAATGATGTGGTTTTTGGTTTTAATTAA 1032 0.5281 MQAHPPFSSYISSLNPHHHHHHHEFVDDEASISLSLGLPGQQHNNKTSHHFQQNPITTAAATTISDVTVALHIGLPCSSTTTTTTTSSPDNSAIATTTTATTTRNDNNNKADHHHHHHHNNLHLASSPNNNINQQGQYWIPSPAQILIGPTQFSCTVCNKMFNRFNNMQMHMWGHGSQYRKGPESLRGAKPASSMLRLPCYCCADGCKNNIAHPRSRPLKDFRTLQTHYKRKHGAKPFGCRKCGKPFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVESCDNDDRMGGEDELLLLGDEDDDEEEGMEVDDDMDEDYHSNDVVFGFN 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g0653 343 Gene3D Classic Zinc Finger 196 285 - -
Aed11g0653 343 PANTHER ZINC FINGER PROTEIN WIP6 1 331 - -
Aed11g0653 343 MobiDBLite consensus disorder prediction 79 136 - -
Aed11g0653 343 MobiDBLite consensus disorder prediction 1 26 - -
Aed11g0653 343 SUPERFAMILY beta-beta-alpha zinc fingers 221 258 IPR036236 -
Aed11g0653 343 ProSiteProfiles Zinc finger C2H2 type domain profile. 153 180 IPR013087 -
Aed11g0653 343 SUPERFAMILY beta-beta-alpha zinc fingers 149 174 IPR036236 -
Aed11g0653 343 PANTHER ZINC FINGER PROTEIN WIP2 1 331 IPR043584 GO:0003700|GO:0010468
Aed11g0653 343 MobiDBLite consensus disorder prediction 312 343 - -
Aed11g0653 343 ProSitePatterns Zinc finger C2H2 type domain signature. 155 175 IPR013087 -
Aed11g0653 343 MobiDBLite consensus disorder prediction 312 333 - -
Aed11g0653 343 MobiDBLite consensus disorder prediction 79 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g0653 Aed-Chr11 6862876 6865073 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g0653 18 294 C2H2 Transcription Factor Family AT1G13290 61.566 9.36e-115 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed11g0653 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g0653 11 6862876 6865073 Aed11g0653 11 6862876 6865073 ECH