Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g0643 TTGGTTCTCGCTTTAGATCTCACTTCAAATTTGTGCAAAGTGGCCAGTGAGAAGGGGAACCTAAGAGAAGAAGAGAAGATTAAAAGAACAATTCACATCCACACAGACAGAACAGAACAGTCACGGTTGAAAGAGTTTAGGAAAGCAGAAAAAGAAGGTTTTGAATTGAATCATCAACTAGTCTCCTATGGCTGGAACATCATGGTTGGTGGACAAAAAATTGCAACCAAAATAAAAAGTGCATCTGGAGCTTGTGATCCTGGAAAGGTTACATGGAAAAGCAATCCTTCCAAGCCTTGCCCAAATTGCCAACATGCGATTGACAATAGTGATGTAGCACAAGAGTGGCCTGGCTTACCAAAAGGTGTCAAATTTGATCCATCTGATCAGGAGATAATTTGGCACTTGCTTGCAAAAGTTGGGGTTGGAGATTCAAATCCTCATCCCTTCATTGATGAATTTATTACTACTCTTGAAGTGGATGATGGAATTTGTTATACTCATCCTCAAAATTTACCTGGTGTTAAGCAACATGGAAGTGCTTCCCACTTCTTCCACCGAGCAATCAAGGCCTACAACACTGGCACCCGAAAGCGCCGAAAAATACTAGATCAAGATTTCGGTGATGTTCGCTGGCACAAGACTGGAAAGACTAAACCAGTTACCTTAAATGGGGTTCAAAAGGGCTGTAAAAAGATTATGGTTCTGTATGTCAGCAATGTAAGAGGAGGAAAAGCTGAGAAAACTAATTGGGTTATGCATCAATATCACCTAGGAACAGAAGAGGACGAAAAGGATGGTGAGTACGTTATCTCTAAAGTGTTTTACCAGCAGCAGCAAGTCAAATTGGGTGATAAGGATGACCAAGATGTTCCTGAAGCCGCCGAATCAACAATTGTGAAAGTGGATCCAGTTACTCCCAAATTGCCTCCCCAGATGGAGTGTTTAGATGAAATTCAATTTCAAGCTGATTGCAAAGACCTTGCAAATGAATCATCCATGGTAGAAAATCAGCATAATGAAGGGATGATGTATGAGAAAGAAAACAATGTGGAGGAAGGCCAGAAATGGTGGGACAGTGAGTCACAGAATCTGTTGGATTCGCAACAGCTGGTCGAGGCACTGTCGCTGTGTGATGATCTACTCCAAAGCCAGTCTCCTGGTAGAGATGGAAAACACGAAGATCATAATAAGAAACAACCTGGTCTTTCTGTTTATGCTCAGCTAGGACCAGAACATCTGAAGAAGGACATTGAAGAGTGTCAGAATCTTGCCCTTGATTCTGCAAATATAGAGAACGATGCACCTTCAGAGCTTCGACTAATAAGCAAATAA 1335 0.4165 LVLALDLTSNLCKVASEKGNLREEEKIKRTIHIHTDRTEQSRLKEFRKAEKEGFELNHQLVSYGWNIMVGGQKIATKIKSASGACDPGKVTWKSNPSKPCPNCQHAIDNSDVAQEWPGLPKGVKFDPSDQEIIWHLLAKVGVGDSNPHPFIDEFITTLEVDDGICYTHPQNLPGVKQHGSASHFFHRAIKAYNTGTRKRRKILDQDFGDVRWHKTGKTKPVTLNGVQKGCKKIMVLYVSNVRGGKAEKTNWVMHQYHLGTEEDEKDGEYVISKVFYQQQQVKLGDKDDQDVPEAAESTIVKVDPVTPKLPPQMECLDEIQFQADCKDLANESSMVENQHNEGMMYEKENNVEEGQKWWDSESQNLLDSQQLVEALSLCDDLLQSQSPGRDGKHEDHNKKQPGLSVYAQLGPEHLKKDIEECQNLALDSANIENDAPSELRLISK 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g0643 444 ProSiteProfiles NAC domain profile. 119 277 IPR003441 GO:0003677|GO:0006355
Aed11g0643 444 PANTHER SUPPRESSOR OF GAMMA RESPONSE 1 67 441 - -
Aed11g0643 444 MobiDBLite consensus disorder prediction 382 404 - -
Aed11g0643 444 Gene3D NAC domain 128 282 IPR036093 GO:0003677|GO:0006355
Aed11g0643 444 Pfam No apical meristem (NAM) protein 120 258 IPR003441 GO:0003677|GO:0006355
Aed11g0643 444 MobiDBLite consensus disorder prediction 386 400 - -
Aed11g0643 444 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 67 441 IPR044799 GO:0003700
Aed11g0643 444 SUPERFAMILY NAC domain 104 277 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g0643 Aed-Chr11 6655418 6663243 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g0643 75 284 NAC Transcription Factor Family AT1G28470 52.511 9.06e-71 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Aed11g0643 NAM 4.8e-21 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g0643 11 6655418 6663243 Aed11g0643 11 6655418 6663243 ECH