Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g0578 ATGTTCATCATGAAATACTTAGCTCTATTCTACACTCATATGAAATGGGTGTTAGATTTTCTTCTCTACTATCCCTTCTACAAGCTCCAATATGGTTCTCATCAAATCCCAATATTTGGTGAATTAGACCAAAGCATAAGCCACTATGCACTTTCCTCAGAGGAATTAGAAGATGTTGATTGTGCAGTTTGTCTATGCAAAATTGGAGATGGTGAAGAGATTAGAGTGCTTATGTGTGAACATTTCTTTCACAGAAATTGCTTGGATACATGGGTTGGTCTCAAAAGTGCAACTTGTCCTCTCTGCAGAGAGCCAGTGAGGCCAAGAAGAGGTAGTAGCATCAATGAGGTTGGAGCTGAAGTTCTATGGTTTGAGTTTTGCTCTTTCCGCACTAATGAGAGTGATACATGGTGGCTACGTTGA 423 0.3995 MFIMKYLALFYTHMKWVLDFLLYYPFYKLQYGSHQIPIFGELDQSISHYALSSEELEDVDCAVCLCKIGDGEEIRVLMCEHFFHRNCLDTWVGLKSATCPLCREPVRPRRGSSINEVGAEVLWFEFCSFRTNESDTWWLR 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g0578 140 ProSiteProfiles Zinc finger RING-type profile. 61 103 IPR001841 -
Aed11g0578 140 SMART ringv_2 60 103 IPR011016 GO:0008270
Aed11g0578 140 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 4 133 - -
Aed11g0578 140 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 42 111 IPR013083 -
Aed11g0578 140 Pfam Ring finger domain 60 103 IPR001841 -
Aed11g0578 140 SUPERFAMILY RING/U-box 41 109 - -
Aed11g0578 140 SMART ring_2 61 102 IPR001841 -
Aed11g0578 140 PANTHER RING ZINC FINGER PROTEIN-RELATED 4 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g0578 Aed-Chr11 5433111 5433533 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g0578 1 106 C3H Transcription Factor Family AT1G15100 31.304 2.48e-12 58.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g0578 11 5433111 5433533 Aed11g0578 11 5433111 5433533 ECH