Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g0576 ATGGTGACCAAGTACCTAACTCTGATTTACACTCATCTCAAATGGGTATTTGATTTTCTTCTCTACTACCCCTTTTACATGCTCCATGCTCCTCAACCACTCATAAAACTTGGAACTGAATTGAGTACATTTCACTATGATTTCACCAACAATAATGGCACAGAGGAAGAACATGATCATGTGGATTGTGCTGTGTGTCTGAACAAAATTAGAGAAGGAGATGAGGTTACTAGAGTCATCAAATGTGACCATGTCTTTCACAAAGGTTGTTTGGATGGATGGATTGGTTTCAAGAACGCCACGTGTCCTCTTTGCAGAGGATCAGTGGCTCCTCCAACAAGCCCTATCATCACTAACTCTGGAGCTGAGAAACCAATTAAAAAGGCAAAACTGATAACTGATACATACAAAACACATCCAAAAGAAAGAATCAATAAACATACAAGGGGGAACACTGCAGCAGCAACAGAAAGAAAATACCTTTCAGAACTGCAGACAGATTCCACAACCTGA 513 0.4016 MVTKYLTLIYTHLKWVFDFLLYYPFYMLHAPQPLIKLGTELSTFHYDFTNNNGTEEEHDHVDCAVCLNKIREGDEVTRVIKCDHVFHKGCLDGWIGFKNATCPLCRGSVAPPTSPIITNSGAEKPIKKAKLITDTYKTHPKERINKHTRGNTAAATERKYLSELQTDSTT 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g0576 170 ProSiteProfiles Zinc finger RING-type profile. 63 106 IPR001841 -
Aed11g0576 170 CDD RING-H2 63 106 - -
Aed11g0576 170 PANTHER RING ZINC FINGER PROTEIN-RELATED 2 113 - -
Aed11g0576 170 SMART ring_2 63 105 IPR001841 -
Aed11g0576 170 MobiDBLite consensus disorder prediction 137 170 - -
Aed11g0576 170 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 2 113 - -
Aed11g0576 170 SUPERFAMILY RING/U-box 56 113 - -
Aed11g0576 170 Pfam Ring finger domain 62 106 IPR001841 -
Aed11g0576 170 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 40 113 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g0576 Aed-Chr11 5413870 5415916 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g0576 62 110 C3H Transcription Factor Family AT1G15100 57.143 8.63e-15 66.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g0576 11 5413870 5415916 Aed11g0576 11 5413870 5415916 ECH