Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g0495 ATGGGAAGGGGTAGGGTACAGCTGAAGAGGATAGAGAACAAGATCAATCGGCAGGTAACTTTCTCGAAAAGGAGAGGTGGGTTGCTCAAGAAAGCTCATGAGATCTCTGTACTCTGTGATGCTGAGGTAGCTTTGATTGTCTTCTCTCACAAAGGAAAGCTCTTTGAGTATGCTACTGATTCATGCATGGAGAAGATACTGGAACGCCATGAAAGGTATGCTTATGCAGAGAGGCAGCTAGTAGCAAATGATTCTGAGACACAGGGAAACTGGACCATTGAATACACTAGACTCAAGGCAAAGATTGACCTTTTACAGAGAAACCACAGGAACTATATGGGAGAAGATTTGGCTTCAATGAGCCTCAAAGAGCTTCAGAGTTTGGAGCAACAGTTGGATACTGCTATCAAAAACATTCGCACAAGGAGGAATGATCTCATGTACGAGTCCATCTCTGAGCTTCAGAAAAAGGAGAAAAGGATACAAGACCAGAATAACATCCTTGCAAAGAAGATAAAGGAGAAAGAGCAGGTTGTAGCACAGCAGGCTGCACAATGGGAGCAGCCAAACTACAGGGAACCTACACCAGAACTAGGACGGAATGGTCTTGACCTGACCCTGGAACCACTGTATTCATGCCACCTTGGATGCTTCTGA 657 0.449 MGRGRVQLKRIENKINRQVTFSKRRGGLLKKAHEISVLCDAEVALIVFSHKGKLFEYATDSCMEKILERHERYAYAERQLVANDSETQGNWTIEYTRLKAKIDLLQRNHRNYMGEDLASMSLKELQSLEQQLDTAIKNIRTRRNDLMYESISELQKKEKRIQDQNNILAKKIKEKEQVVAQQAAQWEQPNYREPTPELGRNGLDLTLEPLYSCHLGCF 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g0495 218 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Aed11g0495 218 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Aed11g0495 218 Coils Coil 151 174 - -
Aed11g0495 218 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Aed11g0495 218 Pfam K-box region 84 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aed11g0495 218 Coils Coil 118 145 - -
Aed11g0495 218 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Aed11g0495 218 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aed11g0495 218 Coils Coil 95 115 - -
Aed11g0495 218 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Aed11g0495 218 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Aed11g0495 218 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Aed11g0495 218 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 198 - -
Aed11g0495 218 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A 1 198 - -
Aed11g0495 218 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677|GO:0046983
Aed11g0495 218 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Aed11g0495 218 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g0495 Aed-Chr11 4350458 4356150 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Aed11g0495 K-box 2.8e-29 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g0495 11 4350458 4356150 Aed11g0495 11 4350458 4356150 ECH
Aed11g0495 11 4350458 4356150 Aed3g0255 3 1885776 1892249 ECH
Aed11g0495 11 4350458 4356150 Aed3g0998 3 7525474 7539471 ECH