Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g0494 ATGGGTAGGGGAAAGGTGGAGCTGAAGAGGATTGAGAACAAGATAAATCGTCAAGTGACATTTGCAAAGAGGAGGAATGGTTTGCTCAAGAAGGCTTATGAACTCTCTGTGCTGTGTGATGCTGAGGTTGCCCTCATTATCTTCTCCAACCGTGGCAAGCTCTATGAGTTCTGCAGTGGCCATAGCATGGCCAAATCACTTGAACGTTATCACAGATGCAGTTATGGAGCCTTGGAAGTACAACACCAACCTGAAATAGAGACACAGAGGCGTTACCAAGAATACCTGAAGCTAAAATCTAGAGTTGAGTCACTACAGCAAACACAAAGAAACCTCCTTGGGGAAGAATTGGAGCAGTTAGATATTAAGGACCTTGAGCAGCTTGAACGTCAACTGGACTCTTCCTTGAAGCAAATCAGGTCTAACAAGACACAACAGATGCTTGATCAACTCTCTGATTTGCATAGAAAGTTGGAGGAAATTAATGTAGCCCTTCAACCAACATGGGAAGATGCTAGGGAGCAAAATGCTCCCTACAATTGCCACCATCCCCAATCAGAGGGATATTATGAGACAGCACATTGCAACAGTACATTGAGAATTGGCTATGATTCTTCAGGGCTAAATGAAGCAGTAGGAGCTGCAGGAACCTCAGCTCAAAATGCTAGTGATTTCATGCATGGATGGATGAACTGA 696 0.4411 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSGHSMAKSLERYHRCSYGALEVQHQPEIETQRRYQEYLKLKSRVESLQQTQRNLLGEELEQLDIKDLEQLERQLDSSLKQIRSNKTQQMLDQLSDLHRKLEEINVALQPTWEDAREQNAPYNCHHPQSEGYYETAHCNSTLRIGYDSSGLNEAVGAAGTSAQNASDFMHGWMN 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g0494 231 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Aed11g0494 231 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Aed11g0494 231 ProSiteProfiles K-box domain profile. 88 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aed11g0494 231 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Aed11g0494 231 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Aed11g0494 231 PANTHER MADS BOX PROTEIN 1 217 - -
Aed11g0494 231 Gene3D - 13 111 IPR036879 GO:0003677|GO:0046983
Aed11g0494 231 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Aed11g0494 231 Pfam K-box region 87 160 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aed11g0494 231 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Aed11g0494 231 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 1 217 - -
Aed11g0494 231 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Aed11g0494 231 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Aed11g0494 231 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Aed11g0494 231 Coils Coil 122 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g0494 Aed-Chr11 4337179 4350058 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Aed11g0494 K-box 1.5e-21 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g0494 11 4337179 4350058 Aed11g0494 11 4337179 4350058 ECH
Aed11g0494 11 4337179 4350058 Aed3g0256 3 1895097 1898060 ECH
Aed11g0494 11 4337179 4350058 Aed3g0997 3 7511890 7518155 ECH