Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g0440 ATGATAATTAACGGGTTGTTGAAAAAAAAAATGGTGAAGATTTGCTGCATTGGTGCTGGCTATGTTGGTGGGCCAACCATGGCTGTGATTGCCCTGAAGTGTCCCGAGATCGAGGTGGTTGTGGTGGACATCGCCGCACCGCGGATCAACGCCTGGAACAGCGAGCACCTCCCGATATACGAGCCCGGGCTCGATGACGTGGTGAAGCAGTGCAGGGGGAAGAATCTCTTCTTCAGCACCGATGTTGAGAAGCACGTTGCCGAGGCCAACATTGTCTTTGTCTCTGTTAACACCCCGACCAAGACTCAGGGTCTCGGAGCTGGCAAGGCTGCTGATCTCACTTACTGGGAGAGTGCTGCCAGGATGATTGCTGATGTATCGAAATCGGACAAGATAGTGGTTGAGAAATCGACTGTCCCTGTGAAGACAGCCGAGGCAATTGAGAGGATTCTGACTCACAACAGGAAAGGCATCAATTTCACAATTCTGTCAAACCCTGAGTTTCTTGCTGAGGGCACAGCAATTGCAGACTTGTTTAACCCTGACCGAGTCCTCATCGGAGGAAGGGAAACCCCGGAGGGACAGAAGGCTATTCAGTATCTCAAGGCTGTTTATGCTCATTGGGTTCCTGATGAGAGAATCCTCTGCACCAATCTGTGGTCTGCTGAACTTTCCAAGCTTGCAGCCAATGCCTTCCTGGCACAGAGGATCTCCTCTGTGAATGCCATGTCGGCGCTTTGTGAGGCCACCGGTGCTGATGTCTCCCAGGTGTCACACTCGATCGGCACAGACTCGAGGATTGGACCCAAGTTCTTGAATGCCAGTGTTGGCTTTGGTGGATCATGCTTCCAGAAGGACATACTGAACTTGGTCTATATCTGTGAGTGCAATGGCCTTCCTGAGGTGGCGAATTACTGGAAACAGGTCATCAAGGTGAACGACTACCAGAAGATGCGGTTTGTGAACCGCGTGGTGTCTTCGATGTTCAACACGGTCTCGGGGAAGAAGATTGCTGTTCTAGGGTTTGCCTTCAAGAAGGACACCGGTGACACTCGGGAGACTCCGGCCATCGATGTGTGCAAGGGCCTTTTGGGAGACAAGGCCAAGTTGAGCATCTATGATCCTCAGGTCACCGAGGATCAAATCACCAGGGATTTGGCAATGAAGAAGTTCGATTGGGACCACCCTGCTCATCTTCAGCCACTGAGCCCTACCTCCAACAAACAAGTATCTGTGGTTTGGGATGCCTATGAGGCAATCAAGGATTCACATGGAATCTGCATTATGACTGAGTGGGATGAGTTCAAGAAACTCGATTACAAGAAGGTCTATGACAGCATGCAGAAGCCTGCATTCGTCTTTGATGGCCGCAACGTCGTTGATGTTAACAAGCTGAGGGAAATCGGTTTCATTGTTTACTCCATTGGCAAGCCTCTAGATTCATGGCTCAAGGACATGCCTGCAGTGGCTTAA 1473 0.5064 MIINGLLKKKMVKICCIGAGYVGGPTMAVIALKCPEIEVVVVDIAAPRINAWNSEHLPIYEPGLDDVVKQCRGKNLFFSTDVEKHVAEANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIERILTHNRKGINFTILSNPEFLAEGTAIADLFNPDRVLIGGRETPEGQKAIQYLKAVYAHWVPDERILCTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGADVSQVSHSIGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIKVNDYQKMRFVNRVVSSMFNTVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQITRDLAMKKFDWDHPAHLQPLSPTSNKQVSVVWDAYEAIKDSHGICIMTEWDEFKKLDYKKVYDSMQKPAFVFDGRNVVDVNKLREIGFIVYSIGKPLDSWLKDMPAVA 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g0440 490 SMART UDPG_MGDP_dh_C_a_2_a 338 462 IPR014027 GO:0016616|GO:0051287
Aed11g0440 490 Gene3D - 251 488 - -
Aed11g0440 490 SUPERFAMILY UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 325 473 IPR036220 -
Aed11g0440 490 Gene3D - 219 250 - -
Aed11g0440 490 Pfam UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 13 196 IPR001732 GO:0016616|GO:0051287
Aed11g0440 490 PANTHER UDP-GLUCOSE DEHYDROGENASE/UDP-MANNAC DEHYDROGENASE 11 490 IPR028356 GO:0003979
Aed11g0440 490 TIGRFAM NDP-sugDHase: nucleotide sugar dehydrogenase 13 458 IPR017476 GO:0016616
Aed11g0440 490 PIRSF UDPglc_GDPman_dh 12 477 IPR017476 GO:0016616
Aed11g0440 490 Pfam UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 338 461 IPR014027 GO:0016616|GO:0051287
Aed11g0440 490 Pfam UDP-glucose/GDP-mannose dehydrogenase family, central domain 220 314 IPR014026 GO:0016616|GO:0051287
Aed11g0440 490 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 13 212 IPR036291 -
Aed11g0440 490 Gene3D - 5 218 - -
Aed11g0440 490 PIRSF UDPglc_DH_euk 6 490 IPR028356 GO:0003979
Aed11g0440 490 PANTHER UDP-GLUCOSE 6-DEHYDROGENASE 1 11 490 - -
Aed11g0440 490 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 220 319 IPR008927 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g0440 Aed-Chr11 3838039 3840594 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g0440 11 3838039 3840594 Aed11g0440 11 3838039 3840594 ECH
Aed11g0440 11 3838039 3840594 Aed11g0440 11 3838039 3840594 PCT