Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g0439 ATGATGATGTCGTATCAATCAATGGAGGAGAGGAAGTTTGTGTGCAAGTATTGCAGCAAGAGGTTCCCTTGTGGAAAGTCTCTGGGTGGCCACATCAGAACTCACATGATGAATGAACACCATCATCGTCGACATCATCATCATGATCAAGAGAGGAGGATAAGCAACAACAATGCTGCTGCTAATGCTATGTTGATGAAGTTTGATGGTGGCAGAAAGAGGAAGAGGGATTTGGGGTCTGAAGAAAATGGTGTTGGTGGTGGAAACAGCAATAACAATAACAACATGAATTATGGGCTGAGAGAGAATCCTAAGAAGACAACGAGGTTTGTGCACTCCAATGCCACTTTGCAACTTGACAAGTTCTGCAAGGAATGTGGGAAGGGTTTCCCATCATTGAAGGCTCTTTGTGGCCACATGGCTTGTCACTCTGAAAAGGACAAATCCAACAACAACAACAACAGGTTTGAGACTGAGAAGCAGAAATTGCTTATGGATAGTGAATCTGACACTGAGACTTCTTCTGCTGCTGCTCCAATAAGAAGGTCCAAGAGAATGAAGTACAAGACCCTTAGCATTAGCAGCAGTAACAACAACCAAAACCAAAACCAACAACCTCAATCTTCTTCTGTGTCAGAGGTTGAGCAGGAGCAGCAAGAAGAGGTGGCAAGGTGTTTGATGATGTTGTCCAAGGATTCTAGCTACAAGGGTCGTTTTGCTGCTTTGCTCACAGAGTCTTCTGACAACAACTCGGTTGTTCTAGAGGCAAAGTCTTCACCTTCTCTTGAAACCAAGGTTACTACTATGATGATGATGAATAATAGTAGTAACAATGGTGAGAATTCTATGTCTAAGATGGAGCACAAGGACTTGAAGTTGAAGTTCAAATCTGCTGAGATTGGCTATGGTTCTGACAATTCTGATTCTGGGTATTTTCGATATGGTCCCAAGTTGGATGATTCGAATGATGATGTTTTTTTCAGGAATAATAATGAGGTTAAGTCTTCAAAAGTTGGGTACTTGACTGGGTTTGAGGACTATGATGTTGAGTCGAGGAAGGTGCTGAGCAGAGGAAGAAGCAGGGGCACTGAATTCAAGAAATTTAAGAAGTCCAACAACTATGATGAGGTGAATGGTTTTGTTGCAAAGTATGATCAGTTCTTGATGACTAGTGAGAGGGACAATGGTGGCTCCGATGATGATGATGATTCTGCTTATGAGAGTGACGAGAACAGCACAGACACTGAGTCTTATCCTGCTCCAAAGGCTCACGGCAACAACAACAACAACCTCAGTAGTAGTGGCCAGAAGGGGAAGAAGAAATTGAAGTTGAAGTCAAAGAAGAAAAGCAAGGCACATGAGTGTCCAATCTGCAACAAGATTTTCAGGTCAGGACAAGCATTGGGGGGTCACAAAAGATCACACTTTATTGGAGGGTCTGAGGAAAACACACTTGTGATTAGGCCAAGTGCTCCTCCTGTTCCTGTTCCTGTTCCTGTTCCTTTTCCTTGCCTCATTGATCTCAATCTACCAGCACCTGTTGATGAATAG 1551 0.4307 MMMSYQSMEERKFVCKYCSKRFPCGKSLGGHIRTHMMNEHHHRRHHHHDQERRISNNNAAANAMLMKFDGGRKRKRDLGSEENGVGGGNSNNNNNMNYGLRENPKKTTRFVHSNATLQLDKFCKECGKGFPSLKALCGHMACHSEKDKSNNNNNRFETEKQKLLMDSESDTETSSAAAPIRRSKRMKYKTLSISSSNNNQNQNQQPQSSSVSEVEQEQQEEVARCLMMLSKDSSYKGRFAALLTESSDNNSVVLEAKSSPSLETKVTTMMMMNNSSNNGENSMSKMEHKDLKLKFKSAEIGYGSDNSDSGYFRYGPKLDDSNDDVFFRNNNEVKSSKVGYLTGFEDYDVESRKVLSRGRSRGTEFKKFKKSNNYDEVNGFVAKYDQFLMTSERDNGGSDDDDDSAYESDENSTDTESYPAPKAHGNNNNNLSSSGQKGKKKLKLKSKKKSKAHECPICNKIFRSGQALGGHKRSHFIGGSEENTLVIRPSAPPVPVPVPVPFPCLIDLNLPAPVDE 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g0439 516 Pfam C2H2-type zinc finger 123 145 - -
Aed11g0439 516 Pfam C2H2-type zinc finger 452 475 - -
Aed11g0439 516 Pfam C2H2-type zinc finger 13 36 - -
Aed11g0439 516 ProSiteProfiles Zinc finger C2H2 type domain profile. 121 148 IPR013087 -
Aed11g0439 516 Coils Coil 146 166 - -
Aed11g0439 516 SUPERFAMILY beta-beta-alpha zinc fingers 122 475 IPR036236 -
Aed11g0439 516 ProSitePatterns Zinc finger C2H2 type domain signature. 123 143 IPR013087 -
Aed11g0439 516 Gene3D Classic Zinc Finger 425 504 - -
Aed11g0439 516 Gene3D Classic Zinc Finger 1 73 - -
Aed11g0439 516 ProSitePatterns Zinc finger C2H2 type domain signature. 455 475 IPR013087 -
Aed11g0439 516 ProSiteProfiles Zinc finger C2H2 type domain profile. 453 475 IPR013087 -
Aed11g0439 516 MobiDBLite consensus disorder prediction 189 216 - -
Aed11g0439 516 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 8 516 - -
Aed11g0439 516 SUPERFAMILY beta-beta-alpha zinc fingers 9 40 IPR036236 -
Aed11g0439 516 MobiDBLite consensus disorder prediction 411 437 - -
Aed11g0439 516 MobiDBLite consensus disorder prediction 396 410 - -
Aed11g0439 516 MobiDBLite consensus disorder prediction 162 218 - -
Aed11g0439 516 MobiDBLite consensus disorder prediction 72 97 - -
Aed11g0439 516 ProSitePatterns Zinc finger C2H2 type domain signature. 15 35 IPR013087 -
Aed11g0439 516 MobiDBLite consensus disorder prediction 391 451 - -
Aed11g0439 516 SMART c2h2final6 453 475 IPR013087 -
Aed11g0439 516 SMART c2h2final6 121 143 IPR013087 -
Aed11g0439 516 SMART c2h2final6 13 35 IPR013087 -
Aed11g0439 516 ProSiteProfiles Zinc finger C2H2 type domain profile. 13 40 IPR013087 -
Aed11g0439 516 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 8 516 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g0439 Aed-Chr11 3825258 3826808 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed11g0439 zf-C2H2_6 1.1e-10 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g0439 11 3825258 3826808 Aed11g0439 11 3825258 3826808 ECH