LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed11g0208	GATATTATCCAAAAGCAGAAGACTGGGACGACTATAACACATATAGATAGTTGGGAATCAGTTTACAGCTCAACTTTTCCTCTATTGAGTTTGAATAGTTCCATGTCTCCGTTTCAGTTATTGTGGGTACTAGTGCTTCTGTTGGTGTGGCCAGAAGCTATTGCTAATGCAAATGATTATGAAATAAAAGGGAGCAACATAGAGTGCCCAATTGTGAAGATTGGAGCAGTGATAGACTTGAGTTCACGTGTGGGAAAAGAGCAGAAGACAGCAATGGAAGTTGCAATCGAAGATGCAAATCGCCAAATTAGTTGCTATTTGCTTTCCTTGAACTTCAATAATCATCGAAACTCATCTCCTACTATGTTGGCTTCCGGAACAAACCTCGATGCAACAGCGTTATTCCACTCAATTAATGAAATCTCCAAAGATGTCCCCATCATATCTCTAACTTCAACAGCTAGTCCAGAAATAACACCAATCCCGTTACCACATTTCATTCAAATGAGCCATGATGTCACCCTTCACATGCACTGCATTGCATCCATCATACACCAATTCAACTGGAGAAAGATCACAGCAATTTACGAACACAACAACTTCTTCACCTCTCATTCAGAGATACTAACAAGACTCTCATATTCTCTCCGTCTAGTTAATGCTGAAATAGACCACTATGTGGCTTTTCCTTCAATAACCACTCTTTCAAACCCAATAGAGAACATAGAACAAGAGCTTATAAAACTCAAGAACAAGAGCAATAGGGTGTTCTTGCTTATTCAATCTTCCTTAGAGTTTGCAACATTGCTGTTCGAAAAGGCGAAGCAAATGGGAATGGTGGAAAAAGGGTCGGTGTGGATCATCACAGATGGTGTAGCTACCCATCTTGATTCATTGGACTCTTCTGTCACCTTCAACATGCAAGGTGTCATGGGGTGCAAAACCAACTTCGTGGAAATGAGTGAAAAGTTCAAACGTTTCAAATTCATGTTTAGGAGGAAGTTTGGATTGGAATACCCTGAAGAAGAAAACTCCCAACCAAGTGTCTTTGCTCTTAGGGCTTATGATGCTGTTTGGACCATTGCTTATGCATTATTGAAGAAATCACAAGGTTATAACTTTTCCTTATCAGAAAGTATTTTACGTAGTAATCATGAGGGTCTTAGTGGGAAGATAAGCTTCAAAGACAGAATGTTATTGGAGCCACCAACCTTTAAGATTGTCAATGTTGTTGGAAAAGGTTACAAAGAGTTAGCATATTGGTCATTGGGGTATGGTTTCAGTGAGAACCTTGTAGTGAACACAACTACAACAACTAGTGCTGGTTCTGCAAGAGTGCTTTTAGGTTCTGTGGATTGGCCTGGTGGGTTGAAAACAATTCCAAAAGGTTGGGTTTACAATATCACTGAGGGAATAAGGCCTTTGAAAATTGGGGTTCCAGCCACTGATCCATGTCCTCAGTTTGTGAATGTGAGTCATGATAAGATACTGAATGCAACACAATTCTCAGGTTTCTCTATCAATGTCTTTGAATCAGTTGTGAAACGCCTGCCTTATCACCTGCCTTTTGACCTTGATGCTGCTGTTGGAGATATTCAAGTGGTGGAACATAGATATGCATTTGCGGAATTCTCTCACCCATACCTTGAATCTGGTATAGCCATGGTAGTGAAAGTAAAACCAGATAGATCCAAAGAAACGTGGATGTTCATGGACGCTTTCACAAAAGAAATGTGGATGTTGATGGCAGTGATGCACCTGTCCATAGCATTTGTAATATGGCTCATTGAAGGTGAAACCAATTCAGAGTTGAGGAGTCTCGGGGCCATTCTCTGGTTTTCTGTCACCACATTGTTCTTTGTACACATGACTCAAAGTTTTACAGCAAGTCTTTCATCTATGATGACAGTTTCCCATCTTGAACCATCTGTGCCAGATATACAAACACTGCTGAGGACAAATGCAATCATAGGGTGCAATAAGAACACTTTTTTGGTTCATTACTTAGTTGATGAACTCAAATTCCAGCCAGAGAATATAAGGGTATTTGACTCCATCCATGATTTCCCAAGAGCCTTTGAGAACAAAGAAATTGTGGCTTCTTTTACTATTGCCCCTCATGCTGATGTCTTCCTAGCTACTTATTGCAAGGGCTACATCAAAGCAGGACCTAACTTGAAGCTTGGTGGATTAGGCTTTGCATTCCCAAAAGGCTCAAGTTTAGCAATTGACATATCTCGAGCAACCCTAAAAGCCATAGAAAGTGGAGAGGTGCAAAAGTTAGAAGAGAAGATGTTGTCCACAACCATTTGTGGATCTACAAACAGCAAAATCCAAAATGAACAACTAGGTCCTCAACCTTTCTTCGGCCTATTTGCCATTTGTGGAGCCATTGCTCTCTTTGGTTTGTCAGCAACCATTATCCATTTTGTTAAAAGGAATGCACAAACACTTATGAGTTACATATCATTATTAGTGTTACAAAGAGGGTTGCAAATAATCAAACTCCTTGGTGGGATGTATCTAAACTATTATACAAGGAGTGCACCAGTACTGCTAGATGCAAATAATCGAGGGAACACACCCCATAACAATAACCAGCTAGCTATACTAAGCGTTGAGTTACCAGTTAACTAA	2637	0.4012	DIIQKQKTGTTITHIDSWESVYSSTFPLLSLNSSMSPFQLLWVLVLLLVWPEAIANANDYEIKGSNIECPIVKIGAVIDLSSRVGKEQKTAMEVAIEDANRQISCYLLSLNFNNHRNSSPTMLASGTNLDATALFHSINEISKDVPIISLTSTASPEITPIPLPHFIQMSHDVTLHMHCIASIIHQFNWRKITAIYEHNNFFTSHSEILTRLSYSLRLVNAEIDHYVAFPSITTLSNPIENIEQELIKLKNKSNRVFLLIQSSLEFATLLFEKAKQMGMVEKGSVWIITDGVATHLDSLDSSVTFNMQGVMGCKTNFVEMSEKFKRFKFMFRRKFGLEYPEEENSQPSVFALRAYDAVWTIAYALLKKSQGYNFSLSESILRSNHEGLSGKISFKDRMLLEPPTFKIVNVVGKGYKELAYWSLGYGFSENLVVNTTTTTSAGSARVLLGSVDWPGGLKTIPKGWVYNITEGIRPLKIGVPATDPCPQFVNVSHDKILNATQFSGFSINVFESVVKRLPYHLPFDLDAAVGDIQVVEHRYAFAEFSHPYLESGIAMVVKVKPDRSKETWMFMDAFTKEMWMLMAVMHLSIAFVIWLIEGETNSELRSLGAILWFSVTTLFFVHMTQSFTASLSSMMTVSHLEPSVPDIQTLLRTNAIIGCNKNTFLVHYLVDELKFQPENIRVFDSIHDFPRAFENKEIVASFTIAPHADVFLATYCKGYIKAGPNLKLGGLGFAFPKGSSLAIDISRATLKAIESGEVQKLEEKMLSTTICGSTNSKIQNEQLGPQPFFGLFAICGAIALFGLSATIIHFVKRNAQTLMSYISLLVLQRGLQIIKLLGGMYLNYYTRSAPVLLDANNRGNTPHNNNQLAILSVELPVN	878

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed11g0208	878	Gene3D	-	654	729	-	-
	Aed11g0208	878	SMART	GluR_14	476	768	IPR001320	GO:0015276\|GO:0016020
	Aed11g0208	878	Pfam	Receptor family ligand binding region	144	411	IPR001828	-
	Aed11g0208	878	SUPERFAMILY	Periplasmic binding protein-like I	71	464	IPR028082	-
	Aed11g0208	878	PANTHER	IONOTROPIC GLUTAMATE RECEPTOR	71	822	-	-
	Aed11g0208	878	SUPERFAMILY	Periplasmic binding protein-like II	473	764	-	-
	Aed11g0208	878	CDD	PBP1_GABAb_receptor_plant	73	431	IPR044440	-
	Aed11g0208	878	Gene3D	-	472	579	-	-
	Aed11g0208	878	PANTHER	GLUTAMATE RECEPTOR	71	822	-	-
	Aed11g0208	878	Gene3D	-	173	344	-	-
	Aed11g0208	878	Gene3D	-	730	764	-	-
	Aed11g0208	878	Pfam	Bacterial extracellular solute-binding proteins, family 3	525	765	IPR001638	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed11g0208	Aed-Chr11	1693466	1699411	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed11g0208	72	818	Ion Channels	AT2G29110	28.401	2.51e-100	332