Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g0181 ATGCAGCAATCAAACGGCTCTGATTCTTCGCAGCAGCAGCAGTCCTCGACGGAGCAGAACGCGCCGCCGCCGAGGCAATCACCGGCGGTGGCGAGGCCGCAGCAGTGGGTGCCGATGCAGTACCCTGCGGCGATGGTAATGCCGCACCACATGTTGCCGCCTCAGCATTACGCGCCGCCGCCCTACGTGCCTTTCCACCATCACCAGTACGCGCCGCCGCAGCACGTAACGCACCATCACCAGCAGCAGCACCACCACCAGCAGAACGGATCCGGCGGCGAGAACAAAACCATCTGGATCGGCGATTTGCATCACTGGATGGACGAAAACTACCTCCATCGCTGTTTCGCTTCCACCGGCGAGATTTCTTCCATCAAGGTTATTCGCAATAAGCAAACAGGCTTATCAGAGGGTTATGGATTTGTGGAGTTTTTTTCACACGCTACAGCTGAGAAAGTTTTGCAAAATTATGCTGGAATTTTGATGCCCAATACTGAACAACCATTTCGTCTGAACTGGGCAACATTTAGCACAGGAGACAAGGGTTCAGATAATGTTCCTGACCTTTCTATTTTTGTAGGAGATTTAGCAGCAGATGTTACAGATAGTTTGTTGCATGAAACTTTTGCTAGTGTATATCCTTCTGTTAAAGCTGCAAAAGTTGTTTTTGATGCCAATACTGGCCGTTCAAAGGGCTATGGTTTCGTCAGGTTTGGAGATGACAATGAGAGATCCCAGGCCATGACTCAGATGAATGGTGTTTACTGTTCAAGCAGGCCTATGCGTATTGGTGCTGCAACTCCAAGGAAATCATCTGGCCATCAACAGGGAGGGCAATCAAATGGCACAGCCAACCAATCTGAAGCAGATTCTACAAACACAACCGTGAGTTTTTCAGTTCTTTTTGTTAGGGCATGCAATTTAGATTTACTGCTACTTTCGAATAGCTGA 951 0.4921 MQQSNGSDSSQQQQSSTEQNAPPPRQSPAVARPQQWVPMQYPAAMVMPHHMLPPQHYAPPPYVPFHHHQYAPPQHVTHHHQQQHHHQQNGSGGENKTIWIGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFFSHATAEKVLQNYAGILMPNTEQPFRLNWATFSTGDKGSDNVPDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRKSSGHQQGGQSNGTANQSEADSTNTTVSFSVLFVRACNLDLLLLSNS 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g0181 316 MobiDBLite consensus disorder prediction 269 290 - -
Aed11g0181 316 Gene3D - 177 295 IPR012677 -
Aed11g0181 316 SMART rrm1_1 97 172 IPR000504 GO:0003723
Aed11g0181 316 SMART rrm1_1 190 264 IPR000504 GO:0003723
Aed11g0181 316 SUPERFAMILY RNA-binding domain, RBD 172 283 IPR035979 GO:0003676
Aed11g0181 316 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 189 268 IPR000504 GO:0003723
Aed11g0181 316 SUPERFAMILY RNA-binding domain, RBD 60 176 IPR035979 GO:0003676
Aed11g0181 316 MobiDBLite consensus disorder prediction 265 290 - -
Aed11g0181 316 CDD RRM2_SECp43_like 188 267 - -
Aed11g0181 316 CDD RRM1_SECp43_like 97 177 - -
Aed11g0181 316 MobiDBLite consensus disorder prediction 1 24 - -
Aed11g0181 316 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 98 165 IPR000504 GO:0003723
Aed11g0181 316 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 191 260 IPR000504 GO:0003723
Aed11g0181 316 Gene3D - 95 175 IPR012677 -
Aed11g0181 316 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 28 296 - -
Aed11g0181 316 MobiDBLite consensus disorder prediction 1 31 - -
Aed11g0181 316 MobiDBLite consensus disorder prediction 63 95 - -
Aed11g0181 316 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47C-RELATED 28 296 - -
Aed11g0181 316 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 176 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g0181 Aed-Chr11 1440210 1445328 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g0181 95 304 Eukaryotic Initiation Factors Gene Family AT4G34110 26.168 2.74e-17 80.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g0181 11 1440210 1445328 Aed7g2435 7 26211805 26217318 PCT