Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g0177 ATGCCTGTAGGCTGTAACTACTCACTCACTGCCAACATTAATGTTTGGCCGTGGAGTGCTGAAGAGGATAGGATTCTGACCGGGCTCGTGGAGGCCCATGGGCCGAGAAACTGGGCCTTGATAAGCCGGTCCATTAAGGGGCGGTCTGGGAAGTCGTGCAGGCTTCGGTGGTGTAACCAACTCAGTCCAACGGTGGAGCACCGCCCCTTCTCCACGCGCGAGGACGAGGTTATTTTACACGCGCACTCGCGGTTCGGGAACAAGTGGGCCACCATTGCCAGAATGCTACCGGGGAGGACCGATAATGCCGTCAAGAACCACTGGAACGCCACGCTCAAGCGGAGGAGGAGGGCCTGCTCCCAGCAACGCCGTCGTTTTGATGCTGATCATGATCATGTCGAGGAGGAGGATGACCCGCTGACAGCGTTGACTCTGGCGCCGCCCGGGACTGGTGGTGTCGCCGGCGGGGAGGAGGTTTCGCCGGCGGCGTTTTGGGATGCGATGCAAGATGTGGTTGCGAGGGAAGTCAGACAATATGTGTCTTCCTCGTTTTCCGAATTCCGACAACCTGGGCTCTAA 579 0.5872 MPVGCNYSLTANINVWPWSAEEDRILTGLVEAHGPRNWALISRSIKGRSGKSCRLRWCNQLSPTVEHRPFSTREDEVILHAHSRFGNKWATIARMLPGRTDNAVKNHWNATLKRRRRACSQQRRRFDADHDHVEEEDDPLTALTLAPPGTGGVAGGEEVSPAAFWDAMQDVVAREVRQYVSSSFSEFRQPGL 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g0177 192 CDD SANT 69 112 IPR001005 -
Aed11g0177 192 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 65 IPR017930 -
Aed11g0177 192 Pfam Myb-like DNA-binding domain 18 76 - -
Aed11g0177 192 PANTHER TRANSCRIPTION FACTOR MYB44-LIKE 17 176 - -
Aed11g0177 192 PANTHER MYB PROTEIN-RELATED 17 176 - -
Aed11g0177 192 Gene3D - 16 66 - -
Aed11g0177 192 MobiDBLite consensus disorder prediction 123 139 - -
Aed11g0177 192 ProSiteProfiles Myb-like domain profile. 17 61 IPR001005 -
Aed11g0177 192 Gene3D - 68 139 - -
Aed11g0177 192 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 116 IPR017930 -
Aed11g0177 192 MobiDBLite consensus disorder prediction 123 157 - -
Aed11g0177 192 CDD SANT 17 59 IPR001005 -
Aed11g0177 192 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Aed11g0177 192 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Aed11g0177 192 SMART sant 14 63 IPR001005 -
Aed11g0177 192 SMART sant 66 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g0177 Aed-Chr11 1412116 1413543 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g0177 17 163 MYB Transcription Factor Family AT4G37260 58.940 4.23e-55 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed11g0177 Myb_DNA-bind_6 1.2e-14 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g0177 11 1412116 1413543 Aed11g0177 11 1412116 1413543 ECH
Aed11g0177 11 1412116 1413543 Aed4g1832 4 22535789 22536442 PCT