Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g0176 ATGCCTCTTTCGCGCAAACCACTCTCTCCGTCGCCGTCCACCGGAGTCAGCCAAATAGACGGCGCTGATATTGTTCCGGCGCGGCGGTTGACCAGGCAGAGGAAGCTCCGGCACCTCAGCGACCAAGACACTGGCTTCTTCCATTCCGATGAATTTTCTTTCTTTCCAGGCTCGCCGGAGCCTCGCTCCCATGGCGGTCACAACCACCGGTCGTTCTCTGCTCTGCCGCAACCGCTGCCGCTTCCCGAAGCGCCGTTGACCCGTCGAGCTAAGTCAATCAGCTCCGGTTCCGTACATCATGGCTTTGCTATTTCCAGGAACACAGTGTATCAAGAAGACGCAGTGACACGTACAAAACCTACACTGTATTTGGATAAATCCACCTTGGATTCTACTCTTACAAATGCAAAATGCAATCTGAGAGGGTACATTCCCGCAGCAAATTTCTTAACAGGCAATAGTTCATGGAAAAACTGCAGAGCAGTGTCTCATGATGATGATGATGATTCTGAAGGTAATTCCCATTTGAACTTGGGTGTTGCTGCCACTGCCAAGCCCAAGAGTACCCCAACAAGTGTACTCACTAGTCCAGATACTTGTCCGTGTAGATTAAGCAATGTAGATTCATTTGATCCTATTCCTACCACCAACTTCTCCTCTTTGGAAGTTAATGACAAACCAAAAATGATATCAGCTAAAACTGTTCATCATAGTCCAGATCATAAACTTTTTTCCAGGGTGTTACTTGAAAATAACCTTGTTGATTTACATCCCTTACCCCTTCCTCCTAGAGCTTCGTTATCTGTGCTGCACCAATCAAGTATCATCATGCATCATGCTACTGATCAAAATCTGTCTTCAGTGAAAGGTCAATGGCAGAAAGGAAAACTCATCGGACGTGGTAGCTTTGGAAGTGTTTTTCATGCAACCAACATAGAAACTGGAGCCTCGTGTGCCCTGAAGGAGGTCAATTTGATTCCTGATGATCCTACATCGGCTGAGTGCATTAAACAACTGGAACAGGAAATCAAAATTCTCCGTCAACTACACCATCCCAACATTGTGCAGTATTACGGTAGTGAAATAGTTGGCGATCATTTGTACATATATATGGAGTATGTCAACCCGGGATCAATCAGTAAATTCATGCGTGAACATTGTGGAGCTATGACAGAATCTGTGGTTCGCAATTTTACAAAGCATATTCTCTCTGGATTAGCTTACTTACATAGCAACAAAGCCATCCACAGAGATATCAAAGGTGCAAACTTGCTGGTCAATGAATTAGGCATTGTCAAGCTTGCAGATTTTGGGCTGGCGAAAATCCTAATGGGGAATTCATATGATCTTTCTTTAAAGGGTAGTCCTTACTGGATGGCTCCAGAGGTAGTGAAAGGTGCCATAAAGAACGAATCCAATCCTGATATTGCTTCAGCCATGTTCAAGGTACTGCAAGAGTCCCCGCCAATACCCGAAACTTTGTCTTCAGTGGGAAAGGATTTCCTCCAGCAATGTTTCCAAAGGGACCCTGCAGATCGACCATCTGCAACAACGCTTCTTAAGCATGCCTTTGTGCAGAATTTGCATGATCAAGATGTTCCAGTTCATTCACAATCCTATCCAAGAGGAGGTAATTCAAGTGGCATAATGCAAGCCTCAATTAGCTCACGGATTTTTAACAAATTTCAGAAATTAATCGGCGATACTCCCGAACAAAGCAATTCTAAGAAGGAGTCTAATCATATTATACCTTATCGTCACTCTCATCATGTTTCTGAAGAAGTGAACATTCTTCAATCTTCATTGGAATCCGGTACCCTCAATTACATGGCTGTTGCAAATTCCAAAAACATCTCCACCGTCGTGAGAATGATCACCAACTTGTGA 1887 0.4425 MPLSRKPLSPSPSTGVSQIDGADIVPARRLTRQRKLRHLSDQDTGFFHSDEFSFFPGSPEPRSHGGHNHRSFSALPQPLPLPEAPLTRRAKSISSGSVHHGFAISRNTVYQEDAVTRTKPTLYLDKSTLDSTLTNAKCNLRGYIPAANFLTGNSSWKNCRAVSHDDDDDSEGNSHLNLGVAATAKPKSTPTSVLTSPDTCPCRLSNVDSFDPIPTTNFSSLEVNDKPKMISAKTVHHSPDHKLFSRVLLENNLVDLHPLPLPPRASLSVLHQSSIIMHHATDQNLSSVKGQWQKGKLIGRGSFGSVFHATNIETGASCALKEVNLIPDDPTSAECIKQLEQEIKILRQLHHPNIVQYYGSEIVGDHLYIYMEYVNPGSISKFMREHCGAMTESVVRNFTKHILSGLAYLHSNKAIHRDIKGANLLVNELGIVKLADFGLAKILMGNSYDLSLKGSPYWMAPEVVKGAIKNESNPDIASAMFKVLQESPPIPETLSSVGKDFLQQCFQRDPADRPSATTLLKHAFVQNLHDQDVPVHSQSYPRGGNSSGIMQASISSRIFNKFQKLIGDTPEQSNSKKESNHIIPYRHSHHVSEEVNILQSSLESGTLNYMAVANSKNISTVVRMITNL 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g0176 628 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 477 623 - -
Aed11g0176 628 SMART serkin_6 292 525 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed11g0176 628 MobiDBLite consensus disorder prediction 1 22 - -
Aed11g0176 628 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 25 241 - -
Aed11g0176 628 ProSitePatterns Protein kinases ATP-binding region signature. 298 321 IPR017441 GO:0005524
Aed11g0176 628 Gene3D Transferase(Phosphotransferase) domain 1 282 604 - -
Aed11g0176 628 ProSiteProfiles Protein kinase domain profile. 292 525 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed11g0176 628 SUPERFAMILY Protein kinase-like (PK-like) 275 550 IPR011009 -
Aed11g0176 628 Pfam Protein kinase domain 293 467 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed11g0176 628 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 238 480 - -
Aed11g0176 628 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE YODA 477 623 - -
Aed11g0176 628 MobiDBLite consensus disorder prediction 57 81 - -
Aed11g0176 628 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE YODA 25 241 - -
Aed11g0176 628 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE YODA 238 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g0176 Aed-Chr11 1405972 1410609 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Aed11g0176 Pkinase 3.3e-47 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g0176 11 1405972 1410609 Aed4g1836 4 22550437 22555713 PCT