Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g0170 ATGGGGTGTGACTGTAGGGTGAAGTTAAATGTGAGAAAGCCTCATTTCTATGAGGTTTATTCCTCTGCCTTCAGCTCTCACAGACTGAAACTTCCCGATGGGTTTGTCTGTCACTTGGAGGGACGAACATATGGATCAGTTTCGTTGACTGGTCCTAGTGGAAACACATGGACAGTGCAATTGATTAAGCAGGACAATGATCTATTTTTTCATCATGGATGGTCGACATTTGTGGTGGATCATCGACTAGAGTGTGGTGAACTTTTGGTTTTCAGATATGAGGGTCACTTGCATTTTACAGTGCAAGTATTTGATAAGGATGCATGTGAGAAAGAGGCAGCGTTTCATTCTGAATCCAGACAAAGTCCAAGTGACTTTGATAATATTAAAGGACAGAAAAGAGATATAAATGGAAATTCTTGTTTGGATATTGTTGTTGATGGTGTTCCAAAGAAAATGAGAGGTAGTACTGATGAGAACCAGGAACTTGAACTGGGTGTTGTTGGTAAAGAACGATCGCGGTATGAAGTAGTAAGACCAATTAGGGTGTTCAGAGAAAATGAAGAAACGTCCAAAGCATGTTCCGCCAATGACACCCCTGTGCCTTTTCACATGGAAAACAGCAATGAAGTTGAAGAGGCTTCCATCCTGTATAGAAGTGGGAAGGATGATGATCGTTATATTCTCAGCGGAGTTTCATTATCAAATGTATCAGCACACGATGAGAAAAAAGTTGCCCAGTCATTTATTTCCTCTTTTCCGTATTTTGTGAGAATCATGAAAAGCTTCAATGTCAATGGTTCATATACTCTGAATATCCCATATCAGTTTTCAATGGCACATCTTCCCAATTGCAAGATAAAGATAATTCTTCATAATTTGAAAGGAGAACATTGGACTGTTAATTCTGTGCCAACAACTAGAGTGCATACTAGTCACACCCTTTGTGGAGGATGGATGGCTTTTGTTCGTGGTAATAACATAAAGGTTGGAGATATCTGTATTTTTGAGCTTGTGCATGAGTGTGAATTACGTGTCCTCATTGCTGAGGTTGGAAATGATGGGCCAGACTGCCAGGTTGGAAAAGTAGCCATTAGTAGGCCTAGTGCAGGACATGCTGCAACTTCCAGATATTTGCCAATGAATCCCACAGTCAACTCGAAATGCATAAGAAAAGTTGATCTATTAGATAACAAGTGGCCAAAGATTGGTCAAGAAACTATTTTATCCATTGACTTAAAGAAATCTAGTAGAGCTTCAAATACTTCTAACAAGATGGGGCTTTGCCCTCAGTCGAAAGCTGCCCATAAAAAGTTGGCTGCTCCGAGGAGACATCGTGTTGAAGATGAACTAAACTCACAGGCTAAAGCTGGTTTGAGAATGTTGTTTGCACTCGATGAACAAAGAGTAGCTCAAGCTTTTACTTCCCCTTTTCCTAGTTTTGTGAAAATAATGAAAAAGTTCAATGTCAGTGGATCATACACTTTGAAAATCCCATACCAGTTCTCAGCAGCACATCTCCCAACTTACAAAACTGAAGTTATACTTCGTAATTCAAGAGATGAATGTTGGACTGTGAACTCGGTTCCGGATGCAAAAGGCAGAACAGTTCACACCTTTTGTGGGGGATGGATGGCTTTTGTTCGTGATAATGACATCAATTTTGGAGACACGTGCATTTTTGAACTCGTTGCTCAGTGTGAAATGCAGGTTTACATATCTGGAGTTGGAAAGGAAGGGCTTGACCATCAAAATGGCCATTTAAAACTTACTAATAGATTAGCTAACTAA 1791 0.4003 MGCDCRVKLNVRKPHFYEVYSSAFSSHRLKLPDGFVCHLEGRTYGSVSLTGPSGNTWTVQLIKQDNDLFFHHGWSTFVVDHRLECGELLVFRYEGHLHFTVQVFDKDACEKEAAFHSESRQSPSDFDNIKGQKRDINGNSCLDIVVDGVPKKMRGSTDENQELELGVVGKERSRYEVVRPIRVFRENEETSKACSANDTPVPFHMENSNEVEEASILYRSGKDDDRYILSGVSLSNVSAHDEKKVAQSFISSFPYFVRIMKSFNVNGSYTLNIPYQFSMAHLPNCKIKIILHNLKGEHWTVNSVPTTRVHTSHTLCGGWMAFVRGNNIKVGDICIFELVHECELRVLIAEVGNDGPDCQVGKVAISRPSAGHAATSRYLPMNPTVNSKCIRKVDLLDNKWPKIGQETILSIDLKKSSRASNTSNKMGLCPQSKAAHKKLAAPRRHRVEDELNSQAKAGLRMLFALDEQRVAQAFTSPFPSFVKIMKKFNVSGSYTLKIPYQFSAAHLPTYKTEVILRNSRDECWTVNSVPDAKGRTVHTFCGGWMAFVRDNDINFGDTCIFELVAQCEMQVYISGVGKEGLDHQNGHLKLTNRLAN 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g0170 596 SMART B3_2 481 577 IPR003340 GO:0003677
Aed11g0170 596 SMART B3_2 16 107 IPR003340 GO:0003677
Aed11g0170 596 SMART B3_2 256 352 IPR003340 GO:0003677
Aed11g0170 596 CDD B3_DNA 254 348 IPR003340 GO:0003677
Aed11g0170 596 SUPERFAMILY DNA-binding pseudobarrel domain 10 109 IPR015300 -
Aed11g0170 596 Pfam B3 DNA binding domain 481 568 IPR003340 GO:0003677
Aed11g0170 596 Pfam B3 DNA binding domain 256 346 IPR003340 GO:0003677
Aed11g0170 596 Pfam B3 DNA binding domain 21 106 IPR003340 GO:0003677
Aed11g0170 596 SUPERFAMILY DNA-binding pseudobarrel domain 251 350 IPR015300 -
Aed11g0170 596 Gene3D - 237 352 IPR015300 -
Aed11g0170 596 Gene3D - 466 576 IPR015300 -
Aed11g0170 596 CDD B3_DNA 21 105 IPR003340 GO:0003677
Aed11g0170 596 Gene3D - 8 109 IPR015300 -
Aed11g0170 596 ProSiteProfiles B3 DNA-binding domain profile. 256 352 IPR003340 GO:0003677
Aed11g0170 596 PANTHER B3 DNA-BINDING DOMAIN PROTEIN 456 591 - -
Aed11g0170 596 PANTHER B3 DNA-BINDING DOMAIN PROTEIN 1 455 - -
Aed11g0170 596 CDD B3_DNA 479 573 IPR003340 GO:0003677
Aed11g0170 596 ProSiteProfiles B3 DNA-binding domain profile. 481 577 IPR003340 GO:0003677
Aed11g0170 596 PANTHER B3 DOMAIN-CONTAINING 456 591 - -
Aed11g0170 596 PANTHER B3 DOMAIN-CONTAINING 1 455 - -
Aed11g0170 596 ProSiteProfiles B3 DNA-binding domain profile. 14 107 IPR003340 GO:0003677
Aed11g0170 596 SUPERFAMILY DNA-binding pseudobarrel domain 474 575 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g0170 Aed-Chr11 1365222 1370299 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Aed11g0170 B3 5.2e-12 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g0170 11 1365222 1370299 Aed11g0170 11 1365222 1370299 ECH