Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g0169 ATGGTTGCAGATCGTGGGAAGAGGACATTTATTGGTCCCATTTCCAATTCAAACATTTCGTGCAATTTCTCCGTGCGGATTATGATCGGCACCTTGTTAGCACTTCCAAAGACATTTTCGGATAATTTAAAGAAGAAGTTGCCGGAAAATGTGACCCTTAAGGGTCCTAGTGGTGCTGCGTGGAATATAGGGATGAATACTAGAGATGATACCTCGTACTTCGCTCATGGTTGGGAGCAATTTGTGAAAGACCACTGTTTGAAAGAGAATGATTTCCTGGTCTTTAAGTACAATGGTGAATCTCAGTTTGATGTTTTAATATTTGATGGCAGGAGCTCGTGTGAGAAGGCAGGTTCTTATTTTGTTCGAAAATGTGGGCACATTGAAACTGAACATGCGGATGGAGGTCTTGACAAGAAAAGGGACACGGATATTTCTTTGGAAGAAGGCAATATCCCTTCAAATGCCGATGTGGAATGCGTTTTGCGTGAGAAATCTGTGCATGTTAATGGTACGAAAGAGCCTATGGATGTACCTCCTGAGACTCCTCCGACTGAAAAGACTTCCAATGCTGGTGTGGAGTCATTTACACCAGATAGAGGAGTCACTCTGGCAACTGTTCCCCTTGAAACTGCTAATGGGAAAAGGATCAGGAAGATTGTTTCTGCTGTTAAGCTTGTCCAGACCAAGCGGAGGGGAAGACCAGCTAAAGTTCGTGAGAGAACACTTGACTGGGTGAATGCACTAGAAGCTTCTGAATCTGTTTCTGCGGCTAGAAGTGGAACATATGAGGTATACCAATCAAATAGAAGGCTTGTCACACAGGATGAGATGAATAATGCCAAAGCATTGGCCGAGGCAGCAGGCGGCAGCGATGGTTTGTCCATAGTCATGAAACCCTCACATGTGTACAAGAGATTCTACGTGTCAATGACTGGTAAGTGGATAAAAAAATATATCACTTCATCAGCTCAAGATGTAATTTTGCGCATGGGTAAGGGTGAATGGATTGCCAGATACAGCTTCGATAATATTCGTAACAATGGAGGACTTACTGGTGGGTGGAAACATTTTGCTTTGGATAATAACCTTGAAGAGGGTGATACCTGTGTGTTTAAACCAGCTGGCCATGTGAACAACACTTTTGTCATTGATATGAGCATTTTCAGAGTTGTTCAGGAGACTGTTCCTACCACCACGATATCTCCTGGAACTGGAAGAAGAAGGGCTAGGAAGCCAGCAATGAAGTCTATTCAGTCAGCAACTTAG 1269 0.4342 MVADRGKRTFIGPISNSNISCNFSVRIMIGTLLALPKTFSDNLKKKLPENVTLKGPSGAAWNIGMNTRDDTSYFAHGWEQFVKDHCLKENDFLVFKYNGESQFDVLIFDGRSSCEKAGSYFVRKCGHIETEHADGGLDKKRDTDISLEEGNIPSNADVECVLREKSVHVNGTKEPMDVPPETPPTEKTSNAGVESFTPDRGVTLATVPLETANGKRIRKIVSAVKLVQTKRRGRPAKVRERTLDWVNALEASESVSAARSGTYEVYQSNRRLVTQDEMNNAKALAEAAGGSDGLSIVMKPSHVYKRFYVSMTGKWIKKYITSSAQDVILRMGKGEWIARYSFDNIRNNGGLTGGWKHFALDNNLEEGDTCVFKPAGHVNNTFVIDMSIFRVVQETVPTTTISPGTGRRRARKPAMKSIQSAT 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g0169 422 Pfam B3 DNA binding domain 33 109 IPR003340 GO:0003677
Aed11g0169 422 Pfam B3 DNA binding domain 297 383 IPR003340 GO:0003677
Aed11g0169 422 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 262 401 IPR044837 -
Aed11g0169 422 ProSiteProfiles B3 DNA-binding domain profile. 294 392 IPR003340 GO:0003677
Aed11g0169 422 CDD B3_DNA 297 390 IPR003340 GO:0003677
Aed11g0169 422 CDD B3_DNA 8 109 IPR003340 GO:0003677
Aed11g0169 422 MobiDBLite consensus disorder prediction 171 199 - -
Aed11g0169 422 SMART B3_2 294 392 IPR003340 GO:0003677
Aed11g0169 422 SMART B3_2 23 111 IPR003340 GO:0003677
Aed11g0169 422 Gene3D - 273 394 IPR015300 -
Aed11g0169 422 MobiDBLite consensus disorder prediction 399 422 - -
Aed11g0169 422 ProSiteProfiles B3 DNA-binding domain profile. 18 111 IPR003340 GO:0003677
Aed11g0169 422 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 32 153 IPR044837 -
Aed11g0169 422 SUPERFAMILY DNA-binding pseudobarrel domain 31 109 IPR015300 -
Aed11g0169 422 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 32 153 - -
Aed11g0169 422 Gene3D - 6 114 IPR015300 -
Aed11g0169 422 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 262 401 - -
Aed11g0169 422 SUPERFAMILY DNA-binding pseudobarrel domain 296 381 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g0169 Aed-Chr11 1356871 1360977 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Aed11g0169 B3 9.3e-12 CL0405