Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g0168 ATGTTCATGGCTAATTCAAACACAGTAATGCAAACCTTGTTATCACCACCTTTGGCGGAGGAGCCAGACCTGTCCTTGAACATAAGCCCTCCCTCTATTTCAGATTCTGAAGCCGCCAAAGATGTTGGTGGAAGCTTTTGCAAAGTGCTTTACAATGATATCTGTTCAACTTCTGATTCGGGTAGCAGTGGAGGAAGTGATTTGAGCCACGAGTTCCACAACCTTGGTCATCGTGACCCCACATTGAAGCTAGGCTTAACTGGAACCGTGGATTTGAATCCGCATCATCATCTTCATCATCATCATCAAGCACAAGGTGTCCCAAGAAGCTTCAATCACCACCACCACCACCACCTTCAACCTCACATCTATGGCCGCGATTTCAAACGAAGTGCAAGAGTTGTCAATGGTGTCAAAAGAAGCGTCAGAGCTCCTAGGATGAGATGGACCACCACCCTCCATGCCCATTTTGTTCATGCGGTTCAACTTCTTGGCGGCCATGAAAGAGCAACTCCGAAGTCTGTGTTAGAGTTAATGAATGTTAAGGATCTAACCCTAGCACACGTCAAGAGTCATTTGCAGATGTATAGAACAGTGAAGAGCACTGACAAAGGCACTGCAGCAGGTCATGGGCAGACAGATATTGGAATATTGAATACAAGGCCCGGGATTATTATTAATAATGTTCATCATCATCAACTGCATGCACCCTCACCCAATTTACCAGACCCGGTTCAAATTTCACACAGGACACCGTGGCAATCATCAATAGAGACAAAAACAAACAATAGTAGACAAGAACCAGAAACCGGTTTGACGTATTCTTCTCATCTCATCAAGGGAAATAATAATGAAACCACGGTGGAAGAAGAAGGGCACAATAATTATGGAGGAGGGTTGGATTCTACCCCTTTGTCACGTTCCTCCGAGGCAATGCTTGACCTTGAATTCACCCTTGGAAGACCCAATTGGCAAAAAGACCACGCCGATAATAATTCATCAAGATCAGAGTTAACTCTTCTCAAGTGTTGA 1032 0.4467 MFMANSNTVMQTLLSPPLAEEPDLSLNISPPSISDSEAAKDVGGSFCKVLYNDICSTSDSGSSGGSDLSHEFHNLGHRDPTLKLGLTGTVDLNPHHHLHHHHQAQGVPRSFNHHHHHHLQPHIYGRDFKRSARVVNGVKRSVRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKGTAAGHGQTDIGILNTRPGIIINNVHHHQLHAPSPNLPDPVQISHRTPWQSSIETKTNNSRQEPETGLTYSSHLIKGNNNETTVEEEGHNNYGGGLDSTPLSRSSEAMLDLEFTLGRPNWQKDHADNNSSRSELTLLKC 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g0168 343 SUPERFAMILY Homeodomain-like 142 199 IPR009057 -
Aed11g0168 343 Gene3D - 144 201 - -
Aed11g0168 343 MobiDBLite consensus disorder prediction 257 306 - -
Aed11g0168 343 Pfam Myb-like DNA-binding domain 146 197 IPR001005 -
Aed11g0168 343 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 3 333 IPR044847 GO:0000976|GO:0006355|GO:0010158
Aed11g0168 343 MobiDBLite consensus disorder prediction 257 291 - -
Aed11g0168 343 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 3 333 - -
Aed11g0168 343 MobiDBLite consensus disorder prediction 322 343 - -
Aed11g0168 343 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 145 198 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g0168 Aed-Chr11 1344023 1349295 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Aed11g0168 Myb_DNA-binding 1.5e-05 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g0168 11 1344023 1349295 Aed11g0168 11 1344023 1349295 ECH
Aed11g0168 11 1344023 1349295 Aed4g1845 4 22585992 22586635 PCT