Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g0110 ATGCCATTCAGGAGCATTGTGCGTGAACTCAAGGAGATTGGAGAGGGCATTAGCAACGTGTATAGATCAAGAGGGGGAGAAGCTAAGCATGTGCATCGCCATGGAAAATCTCACATTGCACCAGAATGTTCCCTACCATCATCGTCATCTTCTTCTTCATCATCATCATCATCATCACAGAGCCAGTGGGCTAACTTGCCATCTGAGTTGCTACTAGACATAATTCAAAGGTTGGAAGCCAGTGAAACTTCATGGCCTGCACGTAGAGCACTTGTGGCATGTGCCTCAGTTTGCAGGTTATGGAGAGAGATAACAAAGGATGTGGTCAAGACACCAGAACAGTGTGGTTTGCTCACTTTCCCCATATCACTAAAGCAGCCTGCTCCAAGAGACTCTCCAATCCAGTGTTTTATCAGGAGAGAAAGAATGTCTTCAACATATTGTTTATATCTCGGTCTGAGCCCTGCTCTTTCTGGTGATATGAGCAAACTGTTACTGGCAGCAAAGAAGATTAGAAGGGCAACATGTACCGAATTTGTAATATCATTGGTTGCCGATGATTTCTCTCGAGCTAGCAACACTTACGTTGGAAAGCTGAGGTCTAATTTTCTGGGCACCAAGTTCACGATCCTGGATGGCGAGCCCCCACATGATTCTTCACTTCCACTGAATTGCAAGTTGCAGCAAAGAGTCCATCTGAAGCAGATACTTCCTAAGGTTGCTGCTGCTAACTACAAAGTGGCCACAGTATCTTATGAACTCAATGTCCTCCGAACAAGAGGTCCAAGGCGAATGCGGTGTATGATGCACTTAATCCCCATATCTGCAATTCAAGAAGGAGGGACTGCCCCTACTCCTTTGAAGTTTACCAATTACCTTAATGAGCATGCATCTACCACCACACAGGACTTAAAAGGAAAGAAGCCAGAAGTTGAATTTGACTCAAGTGGCATTGACGATACTCAAGAATCAACAACAACCACCCAGGGGGCAAGGGAACCATTGGTTTTGAAAAACAAAGCTCCTAGATGGCATGAACAACTGCAATGTTGGTGCTTGAATTTCAAGGGAAGGGTTACAGTGGCCTCTGTGAAGAACTTCCAGCTTGTAGCAGCTGCTGAACCATGCCAAAATGTTTCATCTGCAGAACAAGAAAAAGTGATACTACAATTTGGAAAAATTGGGAAGGACATATTCACCATGGATTACCGATATCCTCTCTCAGCTTTCCAAGCCTTTGCAATATGCTTGAGCAGCTTTGACACAAAACCAGCTTGTGAATGA 1284 0.4455 MPFRSIVRELKEIGEGISNVYRSRGGEAKHVHRHGKSHIAPECSLPSSSSSSSSSSSSSQSQWANLPSELLLDIIQRLEASETSWPARRALVACASVCRLWREITKDVVKTPEQCGLLTFPISLKQPAPRDSPIQCFIRRERMSSTYCLYLGLSPALSGDMSKLLLAAKKIRRATCTEFVISLVADDFSRASNTYVGKLRSNFLGTKFTILDGEPPHDSSLPLNCKLQQRVHLKQILPKVAAANYKVATVSYELNVLRTRGPRRMRCMMHLIPISAIQEGGTAPTPLKFTNYLNEHASTTTQDLKGKKPEVEFDSSGIDDTQESTTTTQGAREPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAEPCQNVSSAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g0110 427 SUPERFAMILY F-box domain 59 107 IPR036047 GO:0005515
Aed11g0110 427 Gene3D Tubby Protein; Chain A 121 427 IPR025659 -
Aed11g0110 427 PANTHER TUBBY-RELATED 1 427 - -
Aed11g0110 427 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 427 - -
Aed11g0110 427 MobiDBLite consensus disorder prediction 25 61 - -
Aed11g0110 427 MobiDBLite consensus disorder prediction 299 331 - -
Aed11g0110 427 Pfam Tub family 124 422 IPR000007 -
Aed11g0110 427 ProSitePatterns Tub family signature 2. 412 427 IPR018066 -
Aed11g0110 427 Gene3D - 56 109 - -
Aed11g0110 427 Pfam F-box domain 63 110 IPR001810 GO:0005515
Aed11g0110 427 ProSitePatterns Tub family signature 1. 355 368 IPR018066 -
Aed11g0110 427 PRINTS Tubby superfamily signature 405 427 IPR000007 -
Aed11g0110 427 PRINTS Tubby superfamily signature 355 371 IPR000007 -
Aed11g0110 427 PRINTS Tubby superfamily signature 195 219 IPR000007 -
Aed11g0110 427 PRINTS Tubby superfamily signature 179 195 IPR000007 -
Aed11g0110 427 PRINTS Tubby superfamily signature 244 271 IPR000007 -
Aed11g0110 427 PRINTS Tubby superfamily signature 337 354 IPR000007 -
Aed11g0110 427 PRINTS Tubby superfamily signature 384 403 IPR000007 -
Aed11g0110 427 MobiDBLite consensus disorder prediction 301 315 - -
Aed11g0110 427 SUPERFAMILY Tubby C-terminal domain-like 112 427 IPR025659 -
Aed11g0110 427 MobiDBLite consensus disorder prediction 42 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g0110 Aed-Chr11 853165 858370 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Aed11g0110 Tub 3.8e-105 CL0395
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g0110 11 853165 858370 Aed11g0110 11 853165 858370 ECH