Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g0072 ATGAAGATCCAGTGCGACGTGTGCAACAAAGAAGAGGCCTCCGTCTTCTGCACCGCCGACGAAGCCGCCCTCTGCGACGGCTGCGACCACCGCGTCCACCATGCCAACAAACTCGCCTCCAAACACCAACGCTTCTCTCTTCTCCGCCCTTCTCCTAAACAACACCCTCTCTGCGATATTTGCCAGGAGAGAAGAGCCTTCACGTTCTGTCAGCAAGACAGAGCGATTTTCTGCAAAGACTGTGACGTGTCAGTTCACTCTGTCAACGAACACACCCTTAAGCACGATAGGTTCCTTCTCACCGGCGTTAAACTCTCTGCTTCTCCCATGCTTCGTTCTTCATCAGAAAAAGAAACTCTTAACGTTTCACTTTCACATCAAAATCAATCAACAACACTACCGGTTGCTACTGTTGAAGGAAGTGGTTCCACAAGCGCTAGCAGCATATCAGAGTATTTGATAGAGACTCTTCCTGGCTGGCAAGTTGAGGACTTTCTCGATTCATACTCTCTTCCCTTTGCTTTCTCTAAGAGTGATGAGTTGCTGCCACGGTTTGATGGTGACGTGGAGGGGCACATGGGTTCGTTCTCGACAGAGAACATGGGGATCTGGGTTCCTCAAGCACCACCACCTCTTGCAGTGTGTTCTTCACAAATGGATCGTGTGATTGGTCATGGTCACGGTGATAGCAACAACATCAAAGGTAGCAGCAGATCGTGGTTGAAGGATGATAATTTCACTGTTCCACAGATTAGTCCTCCCTCCAATTCCAATCCCAAGAGAGCCAGATTTCTATGGTAG 801 0.4919 MKIQCDVCNKEEASVFCTADEAALCDGCDHRVHHANKLASKHQRFSLLRPSPKQHPLCDICQERRAFTFCQQDRAIFCKDCDVSVHSVNEHTLKHDRFLLTGVKLSASPMLRSSSEKETLNVSLSHQNQSTTLPVATVEGSGSTSASSISEYLIETLPGWQVEDFLDSYSLPFAFSKSDELLPRFDGDVEGHMGSFSTENMGIWVPQAPPPLAVCSSQMDRVIGHGHGDSNNIKGSSRSWLKDDNFTVPQISPPSNSNPKRARFLW 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g0072 266 Pfam B-box zinc finger 54 94 IPR000315 GO:0008270
Aed11g0072 266 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Aed11g0072 266 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Aed11g0072 266 MobiDBLite consensus disorder prediction 244 259 - -
Aed11g0072 266 CDD Bbox1_BBX-like 5 47 - -
Aed11g0072 266 SMART bboxneu5 4 47 IPR000315 GO:0008270
Aed11g0072 266 SMART bboxneu5 53 100 IPR000315 GO:0008270
Aed11g0072 266 MobiDBLite consensus disorder prediction 244 266 - -
Aed11g0072 266 PANTHER B-BOX ZINC FINGER PROTEIN 19 1 133 - -
Aed11g0072 266 PANTHER B-BOX ZINC FINGER PROTEIN 22 125 263 - -
Aed11g0072 266 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 133 - -
Aed11g0072 266 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Aed11g0072 266 CDD Bbox1_BBX-like 57 100 - -
Aed11g0072 266 PANTHER B-BOX ZINC FINGER PROTEIN 19 125 263 - -
Aed11g0072 266 Gene3D Classic Zinc Finger 1 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g0072 Aed-Chr11 570612 572079 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Aed11g0072 zf-B_box 8.1e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g0072 11 570612 572079 Aed11g0072 11 570612 572079 ECH
Aed11g0072 11 570612 572079 Aed9g0087 9 630670 631392 PCT