Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g0063 ATGGCCATAGATAATCCCGAGGACGGATTGAAGAAGCTCGAATACTTGTCGCTGGTGTCGAAGGTGTGCACCGAGTTGGAGTCCCACACCGGCACCGGCGACAAGGTTCTCGCGGAGTTCATCACCGAGTTGGGTCGATCGTCGGAGAATGTCGAGGAATTCGACACGAAATTGAAGGAGAATGGTGCGGAGATGCCGGATTACTTTGTCCGAACGCTCCTCACCATTATTCACGCCATTCTCCCTCCCAAGCCCAAGGATTCCAAGAGGGAGAAAGACAGTGGCAACGGCAAGTCCACCAAGTTCAAGGCTCTCGCCATCGCAGACGATAGGGACCGGGCCAAGGAACTTCAGAAGGAGTTGGAATCTGAGGCTAGGGTAAAGCAGAAGCCAGAAATTGAGGAAGATGATGCGTACAGAGATAGAGATAGAGATAGAAGAGATAGGCGCAGAGATAGGTATGGAAGAGACAGAGATGGTGAAGATGATAGAAGGGATTTTGGCAGAAGAGGCAGAGATAGAGATGATGTGGATGATAGAAGAGGAAGAAATAGAGATGATGAAGACGATAGAAGGGATTACGGCAGAAGAGGAAGAGATAGAGATAATGAAGATGATAAAAGGGATTACAGCAGTAGAGGAAGAGATAAATATGACAGGGATAGAGATCAAGATCGAGATAGGCATGAGAGGCACAGGAGAGTTGAACACCAGCAGGAGGAGGAGGAGGAGGATGGGCGTGGAAAGGATAATGGGGACAGAGATGGTAATAGGAAGGGCTCACGGCATGCTTCTGGTGAACTTGAATTATACGCAGTTTATAAAGGGAGAATCTCCAGAGTAATGGAGACTGGGTGCTTTGTCCAGTTGGATGACTTCAGAGGCAAGGAGGGGCTGGTGCATGTGTCGCAGATGGCAACTCGGAGGATTACAAATGCCAAGGATGTTGTTAAGCGTGACCAGGAAGTGTATGTAAAGGTGATCTCAGTTTCGGGTCAGAAGTTGTCTCTTTCCATGAGGGACGTAGACCAGCACACTGGCAAGGATCTCCTTCCGTTGAAGAAGAACTCCGAGGATGATGCACTGAGGATGAATCCGCAGGATGCAAAAGATGGTCCTGTTGCCAGGACAGGGCTTTCTGGTATCAGGATTGTGGAAGAAGAGGATGTTGGTTCTTCGCGGAGACCTCTGAAGAGAATGAGCTCTCCGGAGAGATGGGAAGCGAAACAGTTGATTGCTTCGGGTGTCTTGAGTGTTTCAGAGTATCCAACTTATGATGATGAGGGAGATGGATTGCTGTACCAAGAGGAAGGTGCAGAGGAGGAGCTTGAGATTGAGTTGAATGAGGATGAACCTGCATTCTTGCAAGGGCAGAGCAGATACTCAATGGATATGTCTCCTGTTAAGATTTTTAAGAATCCAGAAGGTTCTCTGGGTCGAGCTGCTGCACTCCAGTCTGCACTTATAAAGGAACGTAGGGAGGTGCGAGAACAACAACAGCGCACAATGCTTGATTCAATCCCAAAGGATCTCAATCGGCCTTGGGAAGACCCTATGCCAGAGTCAGGTGAAAGGCATCTTGCCCAGGAGCTTAGGGGTGTTGGCTTATCAGCCTATGATATGCCGGAATGGAAGAAGGATGCCTATGGGAAAACCATTACATTTGGGCAAAGGTCAAAGCTTTCTATTCAGGAGCAGAGGCAGAGTTTGCCAATTTACAAGCTAAAAAAAGAATTGATTCAGGCTGTGCATGATAATCAGGTGTTGGTGGTTATTGGAGAAACTGGTTCAGGTAAGACTACCCAAGTCACTCAGTATCTGGCTGAAGCGGGTTACACCACAAAAGGCAAAATTGGGTGTACTCAACCCCGTAGGGTGGCTGCAATGTCAGTTGCAAAGAGAGTCGCAGAAGAGTTTGGTTGTCGATTGGGAGAGGAAGTTGGTTATGCCATTCGTTTTGAAGATTGCACTGGACCAGACACCGTTATCAAGTACATGACAGATGGTATGCTTCTTAGGGAAATATTGGTTGATGAGAATCTGTCACAGTACTCTGTTATAATGCTTGATGAAGCCCACGAAAGAACGATTCATACCGATGTTCTTTTTGGACTGTTGAAGCAGCTAGTGAAGCGCAGACCTGAATTGCGACTTATTGTGACATCTGCTACTCTGGACGCTGAAAAATTTTCAGGATATTTCTTTAACTGTAACATCTTTACTATTCCCGGTAGAACTTTTCCTGTCGAAATACTATACACTAAGCAGCCTGAAAGTGATTATTTAGATGCATCTTTAATCACTGTTTTACAGATCCACTTGACAGAGCCTGAGGGAGACGTTCTTCTCTTTTTGACTGGTCAAGAAGAGATTGATTTTGCTTGCCAATCTCTCTATGAGAGAATGAAAGGATTAGGTAAGAATGTTCCAGAGCTGATCATTTTACCAGTTTATAGTGCCCTTCCTAGTGAAATGCAGTCTAGGATATTTGATCCTGCTCCTCCTGGGAAAAGGAAAGTGGTTGTGGCTACTAACATTGCTGAGGCTTCTTTAACTATTGATGGAATATTTTATGTGATTGATCCTGGATTTGCTAAGCAAAATGTTTATAACCCAAAGCAAGGACTCGATTCTTTGGTGATAACTCCAATTTCACAAGCATCAGCCAAACAAAGAGCTGGACGTGCAGGGCGTACTGGACCTGGGAAGTGTTACCGCCTCTACACTGAGAGTGCATATAGGAATGAGATGTCTCCTACTACAATTCCTGAGATTCAAAGGATAAATCTGGGGATGACTACTCTTAATATGAAAGCTATGGGGATAAATGATCTGCTGTCTTTTGATTTTATGGATCCACCATCACCCCAAGCTTTGATTTCTGCCATGGAGCAGCTTTACAGTCTTGGAGCATTGGATGAAGAGGGGCTTTTAACCAAATTAGGGAGGAAAATGGCAGAATTTCCTTTGGAACCACCATTGTCCAAGATGTTGCTTGCCAGTGTGGACCTTGGTTGCAGTGATGAGATTTTGACCATAATTGCCATGATCCAGACTGGCAATATTTTTTACAGGCCAAGGGAAAAGCAAGCCCAAGCAGATCAGAAGAGGGCAAAGTTTTTCCAGCCAGAGGGTGACCATCTTACCCTACTTGCTGTTTATGAGGCTTGGAAAGCCAAAAATTTTTCTGGGCCCTGGTGTTTTGAAAACTTCGTTCAGTCCCGGTCATTGAGAAGAGCACAGGATGTCAGGAAACAACTCCTCACTATTATGGACAAGTACAAACTGGATGTTGTAAGTGCTGGAAAAAACTTCACCAAAGTCAGGAAGGCTATCACTGCAGGATTCTTTTTCCATGCTGCTAGAAAGGACCCCCAGGAAGGTTACAGAACCCTTGTTGAGAACCAGCCTGTGTATATCCATCCAAGTTCAGCTTTGTTCCAGAGACAGCCAGACTGGGTCATCTACCATGAGCTTGTGATGACAACTAAGGAATATATGCGTGAGGTGACCGTCATAGACCCCAAATGGCTTGTTGAAATGGCTCCAAGATTCTTCAAAGTGTCAGATCCTACAAAGATGAGCAAGCGAAAGCGTCAAGAGCGAATTGAACCACTTTATGATAGATACCACGAGCCAAATTCATGGCGTTTGAGTAAACGCCGGGCATGA 3672 0.4562 MAIDNPEDGLKKLEYLSLVSKVCTELESHTGTGDKVLAEFITELGRSSENVEEFDTKLKENGAEMPDYFVRTLLTIIHAILPPKPKDSKREKDSGNGKSTKFKALAIADDRDRAKELQKELESEARVKQKPEIEEDDAYRDRDRDRRDRRRDRYGRDRDGEDDRRDFGRRGRDRDDVDDRRGRNRDDEDDRRDYGRRGRDRDNEDDKRDYSSRGRDKYDRDRDQDRDRHERHRRVEHQQEEEEEDGRGKDNGDRDGNRKGSRHASGELELYAVYKGRISRVMETGCFVQLDDFRGKEGLVHVSQMATRRITNAKDVVKRDQEVYVKVISVSGQKLSLSMRDVDQHTGKDLLPLKKNSEDDALRMNPQDAKDGPVARTGLSGIRIVEEEDVGSSRRPLKRMSSPERWEAKQLIASGVLSVSEYPTYDDEGDGLLYQEEGAEEELEIELNEDEPAFLQGQSRYSMDMSPVKIFKNPEGSLGRAAALQSALIKERREVREQQQRTMLDSIPKDLNRPWEDPMPESGERHLAQELRGVGLSAYDMPEWKKDAYGKTITFGQRSKLSIQEQRQSLPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTKGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILVDENLSQYSVIMLDEAHERTIHTDVLFGLLKQLVKRRPELRLIVTSATLDAEKFSGYFFNCNIFTIPGRTFPVEILYTKQPESDYLDASLITVLQIHLTEPEGDVLLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTGPGKCYRLYTESAYRNEMSPTTIPEIQRINLGMTTLNMKAMGINDLLSFDFMDPPSPQALISAMEQLYSLGALDEEGLLTKLGRKMAEFPLEPPLSKMLLASVDLGCSDEILTIIAMIQTGNIFYRPREKQAQADQKRAKFFQPEGDHLTLLAVYEAWKAKNFSGPWCFENFVQSRSLRRAQDVRKQLLTIMDKYKLDVVSAGKNFTKVRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVEMAPRFFKVSDPTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA 1223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g0063 1223 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 560 1093 IPR027417 -
Aed11g0063 1223 Gene3D - 266 351 IPR012340 -
Aed11g0063 1223 Gene3D - 945 1044 - -
Aed11g0063 1223 SMART ultradead3 568 752 IPR014001 -
Aed11g0063 1223 CDD DEXHc_DHX8 565 743 IPR044762 GO:0000398|GO:0003724|GO:0005524
Aed11g0063 1223 SUPERFAMILY Nucleic acid-binding proteins 270 347 IPR012340 -
Aed11g0063 1223 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 768 941 IPR001650 -
Aed11g0063 1223 Coils Coil 481 501 - -
Aed11g0063 1223 CDD S1_DHX8_helicase 271 347 - -
Aed11g0063 1223 Pfam Helicase conserved C-terminal domain 770 900 IPR001650 -
Aed11g0063 1223 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 580 743 IPR014001 -
Aed11g0063 1223 SMART S1_6 269 340 IPR022967 -
Aed11g0063 1223 MobiDBLite consensus disorder prediction 83 262 - -
Aed11g0063 1223 PANTHER - 216 1223 - -
Aed11g0063 1223 Gene3D - 746 920 IPR027417 -
Aed11g0063 1223 Gene3D - 542 745 IPR027417 -
Aed11g0063 1223 ProSiteProfiles S1 domain profile. 271 340 IPR003029 GO:0003676
Aed11g0063 1223 CDD SF2_C_RHA 747 908 - -
Aed11g0063 1223 Pfam Helicase associated domain (HA2) 962 1050 IPR007502 GO:0004386
Aed11g0063 1223 SMART helicmild6 796 900 IPR001650 -
Aed11g0063 1223 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 1108 1183 IPR011709 -
Aed11g0063 1223 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 685 694 IPR002464 -
Aed11g0063 1223 Pfam S1 RNA binding domain 272 338 IPR003029 GO:0003676
Aed11g0063 1223 Coils Coil 107 127 - -
Aed11g0063 1223 PANTHER ATP-DEPENDENT RNA HELICASE 216 1223 - -
Aed11g0063 1223 Pfam DEAD/DEAH box helicase 576 726 IPR011545 GO:0003676|GO:0005524
Aed11g0063 1223 SMART ha2_5 961 1051 IPR007502 GO:0004386
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g0063 Aed-Chr11 487880 494345 Dispersed/Transposed