Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g0061 ATGATGATGGCTTCCGTAGAAGAAAAGATTAAAACTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGATTGGTTGTTGGTGGTGGTCAAACTCTTGTTGCTGAGATGAAACTGTTGAAAGAAATGCAGGAACATTCTGGGGCGAGAAAGACTTTGAATTCGGAGTTATGGCATGCTTGTGCAGGCCCTCTAGTGTCATTACCCCAGCTTGGAAGCCTTGTGTTTTACTTCCCTCAGGGACACAGTGAACAGGTGGCAGCTTCTACTAGAAGAACAGCAACCTCTCAGATTCCAAACTATCCCAATCTTCCATCTCAGTTGCTGTGTCAAGTTCAAAATGTCACACTTCATGCAGACAAGGAGACAGATGAAATCTATGCTCAAATGACTCTTCAACCACTGAGTTCTGAAAAAGATGTCTTTCCCGTATCTGATTTTGGGCTGAAGCATAGTAAACATCCCACTGAGTTCTTCTGCAAAACTTTGACTGCTAGTGACACCAGCACGCATGGCGGGTTTTCGGTTCCACGCAGGGCAGCAGAGAAGCTCTTTCCTCCATTGGATTACACAATTCAACCCCCAACTCAAGAACTTGTTGTTCGAGATTTGCATGATAATACCTGGACATTTAGACATATATACCGGGGTGAGGATGAGAAATCACAATTGCGTGTTGGTGTGAGGCGTGTTAATCGCCAACAGACAACACTGCCATCATCAGTACTTTCTGCTGATAGCATGCACATTGGTGTGCTTGCTGCTGCAGCTCATGCTGCTGCCAATCGAAGTCCATTCACTATCTTCTACAATCCAAGGGCATGCCCTTCAGAATTTGTTATTCCTCTGGCCAAATACAGAAAAGCTGCATTTGGGACTCAGGTCTCAGTTGGCATGAGATTTGGCATGATGTTTGAGACAGAAGAATCGGGTAAGCGCAGATATATGGGTACAATAGTTGGTATCAGTGATGTGGATCCTTTAAGATGGCCTGGTTCTAAATGGAGAAATATTCAGGTGGAGTGGGATGAGCCAGGGTGTGGTGATAAGCAGAATAGAGTTAGTGTATGGGAGATTGAGACTCCTGAAAGCCTTTTTATCTTTCCTTCTTTGACTTCCGGTCTTAAACGGCCATTACCATCTGGACTTTTGGAAAATGAGTGGGGAACTTTGTTAAGAAGACCTTTTATAAGAGTTCCAGAAAATGGAACCATGGAGCTCCCAAACTCAATGCCAAATCTCTACTCAGAACACATGATGAAAATGCTTTTTAAACCCCAGCTTATTAACAATAATGGAGTATTTTTATCCGCCATGCAACAAGAATCTGCTGCTACAAGAGGTCCTTTGCAAGACATGAAGACCACACTGGCAGCAGAAAACCAAATGCCGCTTAAAAATCTACATTCTCAATCTATCCCTGACCAACCTAATGCCTTAAACATGCAATCACTGATGATGAAAAATGATCAAGCTGAAAAGTTGAATCCTCTTGCCAAAATTGATAATCATCTTCCTTCTGGGATTGTAATTGACAAGCCAAAATTAGAATCTGAGGTATTACCTGATCACGTGATTGACTACCCTTACATGGAAGGGTGCAACATCGAAAAGGTGGCAGCAAATCCTGTTAACCAGCAAGGCCTAGCGAACCAATTGCCATTCCATAATCAAAACCAGAGTCCAGTACGACTCACTCAATCTAGTCCATGGCCTATGCAACCTCAGATAGAATCATCCATACCCCATCCTCAAATGATTGATATGGCTCAAGCTGATGCTTCTATGGTAAATGGCCTGTTTCCTCAGCTTGACATTGATGAATGGATGGCTTATGCTTCTTCCCAACCTTTTGCTGGACAGAACAGACCAACTGGACCTTTGTCAGACTTGCAAGAACATACCACACTTCAGCCTCAAGTAGTGAATCCCCCTTTACCTTCAATGAACAATGAAGTGTGGGATCATTATGTCAAGAACATGAAGTTCTTATCTCAAACAGACCAGCAACTAGCATCCATCTGTCAGCCGGGGCTGTATGGCCTCAATGGCATATCTAGTTCAAACAGTTTGAGGGATCTTTCAGCTGAGAGCAACAACCAAAGTGAGATTTGTGTCAATGTTGATGTTAGCAACAGTGTAGGCACCACCATGGTTGATCCTTCTACTTCAAGCACCATTTTGGACGAGTTTTGCACAATGAAGGACAGAGAATTTCATAATCCACAAGATTGCATGATGGCCAACTTGAGTTCAAGCCAGGATGTCCAGTCTCAGATAACCTCTGCTAGTCTAGCTGAGTCACATGCCTTTCCTTTGAGAGACATCGCTGACAACTCAGGTGGAACTTCTTCAAGCCATGTTGATTTTGATGAAAGCAGCTTTTTGCAGAATAATAATTCATGGCAGCAAGTACCTGCGCCCATTAGAACCTACACAAAGGTGCAAAAGGCAGGTTCTGTAGGAAGATCAATTGATGTGACTACTTTCAAGAACTATGAGGAGTTGATCCGTGCAATTGAATGCATGTTTGGACTCGACGGTCTTCTGAATGACACCAAAGGTTCAGGATGGAAATTGGTGTATGTAGATTATGAGAGTGATGTTCTACTTGTTGGGGATGATCCTTGGGAGGAATTTGTGGGCTGTGTCCGCTGCATCAGAATTTTATCACCTTCAGAAGTTCAGCAGATGAGTGAAGAGGGGATGAAGCTTCTAAACAGTGGAGCTTTGCAAGGGATGAATGTTTGA 2748 0.4356 MMMASVEEKIKTGGGGGGGGGGGLVVGGGQTLVAEMKLLKEMQEHSGARKTLNSELWHACAGPLVSLPQLGSLVFYFPQGHSEQVAASTRRTATSQIPNYPNLPSQLLCQVQNVTLHADKETDEIYAQMTLQPLSSEKDVFPVSDFGLKHSKHPTEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTIQPPTQELVVRDLHDNTWTFRHIYRGEDEKSQLRVGVRRVNRQQTTLPSSVLSADSMHIGVLAAAAHAAANRSPFTIFYNPRACPSEFVIPLAKYRKAAFGTQVSVGMRFGMMFETEESGKRRYMGTIVGISDVDPLRWPGSKWRNIQVEWDEPGCGDKQNRVSVWEIETPESLFIFPSLTSGLKRPLPSGLLENEWGTLLRRPFIRVPENGTMELPNSMPNLYSEHMMKMLFKPQLINNNGVFLSAMQQESAATRGPLQDMKTTLAAENQMPLKNLHSQSIPDQPNALNMQSLMMKNDQAEKLNPLAKIDNHLPSGIVIDKPKLESEVLPDHVIDYPYMEGCNIEKVAANPVNQQGLANQLPFHNQNQSPVRLTQSSPWPMQPQIESSIPHPQMIDMAQADASMVNGLFPQLDIDEWMAYASSQPFAGQNRPTGPLSDLQEHTTLQPQVVNPPLPSMNNEVWDHYVKNMKFLSQTDQQLASICQPGLYGLNGISSSNSLRDLSAESNNQSEICVNVDVSNSVGTTMVDPSTSSTILDEFCTMKDREFHNPQDCMMANLSSSQDVQSQITSASLAESHAFPLRDIADNSGGTSSSHVDFDESSFLQNNNSWQQVPAPIRTYTKVQKAGSVGRSIDVTTFKNYEELIRAIECMFGLDGLLNDTKGSGWKLVYVDYESDVLLVGDDPWEEFVGCVRCIRILSPSEVQQMSEEGMKLLNSGALQGMNV 915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g0061 915 CDD B3_DNA 157 226 IPR003340 GO:0003677
Aed11g0061 915 SMART B3_2 158 245 IPR003340 GO:0003677
Aed11g0061 915 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 40 913 IPR044835 GO:0003677|GO:0006355|GO:0009725
Aed11g0061 915 SUPERFAMILY CAD & PB1 domains 811 888 - -
Aed11g0061 915 Gene3D - 293 365 - -
Aed11g0061 915 SUPERFAMILY DNA-binding pseudobarrel domain 147 258 IPR015300 -
Aed11g0061 915 Pfam B3 DNA binding domain 158 229 IPR003340 GO:0003677
Aed11g0061 915 Gene3D - 806 898 - -
Aed11g0061 915 PANTHER AUXIN RESPONSE FACTOR 5 40 913 - -
Aed11g0061 915 Pfam AUX/IAA family 805 896 IPR033389 -
Aed11g0061 915 Gene3D - 155 236 IPR015300 -
Aed11g0061 915 ProSiteProfiles PB1 domain profile. 809 893 IPR000270 GO:0005515
Aed11g0061 915 Pfam Auxin response factor 255 338 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g0061 Aed-Chr11 469008 474533 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Aed11g0061 AUX_IAA 3.1e-11 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g0061 11 469008 474533 Aed11g0061 11 469008 474533 ECH