Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g0058 ATGGGAGTTCCAGCGTTCTATCGATGGCTGGCGGAGAAGTATCCGATGGTGATTGTGGATTCAATCGAAGAGGAACCGGTCGTAATCGAAGGCGTTCAAATCCCGGTGGACACGAGCAAGGAGAACCCTAACAACATAGAATACGATAACCTCTATCTCGACATGAACGGCATCATTCATCCCTGCTTTCACCCCGAGGATAGGCCGTCTCCGACGTCGTTCGATGAGGTGTTTGAGTGCATGTTCGACTACATTGACAGGCTATTCAATATGGTGCGGCCGCGGAAGCTGCTCTATATGGCTATTGACGGTGTTGCGCCGAGGGCGAAGATGAACCAGCAGCGGTCTAGGCGGTTTAGGGCTGCCAAAGATGCATCTGATGCGGCTGCTGAAGAAGCAAGGTTAAGGGAGGAATTTGAGCAGGAGGGCAGAAAGCTTCCTCCTAAAGAAGAGTCACAGACTTTTGATTCAAATGTCATTACACCTGGAACTGACTTTATGGCTGTTTTGTCAATTGCACTTCAGTACTATGTTCACCTTAGGTTGAACAATGACCCTGGTTGGCAAAATATTAAGGTTATTCTTTCTGATGCAAATGTTCCTGGTGAAGGGGAGCATAAGATTATGTCCTATATCCGCCTGCAGAGAAATCTTAAAGGTTATGATCCAAATACAAGACATTGCCTATATGGTTTGGATGCTGATTTGATTATGTTGGCATTGGCTACCCATGAAGTTCATTTTTCAATTCTTAGAGAGGTTGTATTTACTCCTGGACAAGACAAATGCTTCCTATGTGGTCAGATGGGTCATATGGCTGCAAACTGTGAAGGAAAGGCAAAAAGGAAGGCAGGAGAGTTTGATGAAAAAGGAGATGCTATTGTGGCGAAAAAGCCCTTCCAGTTCCTGAATATTTGGACTCTGAGAGAATATCTGGAGTATGAGATGAGAATACCTAATGCTCCTATCGAGATTGATTTTGAATGCATGGTGGATGATTTTATCTTCATGTGTTTTTTTGTTGGCAATGATTTTCTACCACATATGCCTACACTAGAGATCCGTGAGGGTGCAATTAACTTGTTGATAGCAGTATACAAGAAGGAATTTAGGGAATTCGGTGGTTATTTAACCAATGGAAGCACGATAAATTTGAGCAGGGTGGAACACTTCATTCAGGCTGTTGGATCTTATGAAGATAAAATATTTCAGAAAAGAGCTCGATTGCATCAGAGACAAACAGAAAGAATAAAGCGTGAAAAGGCACAGGCAAGAAGGGGAGATGATGCTGAGCCTCAATCACAACCAGAGACTTTAGTTGCAGTTTCACGATTCCATGGTTCTCGACTTGCTTCAGCTCCAACACCTTCACCATTTCAACAATCTGGGCATTGTAATTCACATGTGTCCGCATCAGCTAGAAAAGACAATAAAGAAGCCTTTGAGAGGCCTAATAAAGTTGCTAGGTTTTCAGGAGCAACTGTCTCTGCTGCTGTTGTTGAAGCTGAGAATAATCTTGAAATAGATGCTCAAGATAATAAAGAAGAATTGAAAACAAAATTGAAGGGGATACTTCGTGAGAAATCTGATGTATTCAACTCAAATAATGCTGAAGAGGATAAGATTAAGTTGGGAGAACCAGGCTGGAAAGAAAGGTATTATGAAGAAAAATTTTCAGCCCAAACTCCTGAGGAACTTGAAGCGATACGGAGAGATGTTGTCTTGAAATACACTGAAGGCCTATGTTGGGTGATGCACTATTATTATGAAGGTGTTTGTTCTTGGAATTGGTTTTATCCTTATCATTATGCCCCCTTTGCGTCTGATCTCAAGGGCCTTGGTGAACTTGATATTAGCTTTAAGCTGGGTACCCCATTCAAACCATTTGACCAGCTTCTAGGGGTCTTTCCTGCTGCTAGCTCTCATGCACTTCCTGAGCCATATAGGAAACTTATGACAGATCCAAACTCACCAATCATTGATTTTTATCCAATTGACTTTGAAGTGGACATGAATGGCAAACGCTTTGCTTGGCAGGGTATTGCTAAGTTGCCATTTATTGATGAAGTGCGTCTTCTTGCAGAAGTTCAGAAGATTGAAAACTTGTTAACACCAGAGGAAAAGCGACGGAACGCTATAATGTTTGACTTGGTTTTTGTGAATTCTTGTCATCCTCTCTCTGCGTGCATAAGTACACTTGACAACAGGTGTAAAAACATGCCAAACAGTGAACGGGCTGTGGTCAAGGAAAGAATCAATCCTGATGAAAGGGATACATGCAGTGGTGGAATGAATGGTTACATATCCTTATGTGGTGGAGAACCTTGCCCCCCTATCTTTAGGTCTCCTGTTGCAAGCATGGAAGATATCATGGACAATCATGTTATATGTGCAATATATAGACTCCCAGATGCACATAAACACATTGCTCGACCACCACCAGGTGTTAAATTTCCAGAAAAGATTGTTGGACTTGGGGATCTAAAACCTGATCCTGTTTTGTGGCATGAAGATTCAGGAGGTAGGAGATACCATGGTGACAATGGGAGGAAAAACCCTCCCGGATCAATTTCTGGTCGGGAGCTTGGGGATGCAGCACACAGACTCGTCGTCAATTCCTTACAGGCAAAGGTTGGCACTAATGGATACCGCAATCCACATAATGGACCTCCTATATCTTATCCTGCACCAGTGGGTCATCATCGACAACCGGTGCCTTCATATGGTTATGAATCACAGGCAGGATACGTTGCAATGCCGCCACCTATTTCAGCTCCCTCACTCCAAGGCAGACCACAGTTTGCACCTTACAATGCTCAGCAGTATGGTTATAATCAAACATACCCGCCTCCACCGGTGGTGTACAATCCCCGTCAGCAATCAAATTCTTACGAAAGAAATGAGTATCAAAACCCTAGATCACATCAGTATGAAAGAAATCACCATCAGGGTAGTGGGGGTAGTTCAAGGCATGGATATCATCAATCATCAGGAAATAATCACAATGCCAGGTATAATAATAATAATAATAATAATTCACAAGGTGCATATGGTAGTCACCATCATGAAGCTAGTCACCACAGCCAAAACTTCCAACCTTCTAGAGGTCATCAGAATTGGACTCCACGAGGAAACAGGGATTCTGGTCATCATCATTCGTCAAATCAATATTCTTTATTAGATAGAAGAGGAAACAGGAATCCAATGCCACCACCTGGTTACAGTCGCAAATAA 3234 0.4276 MGVPAFYRWLAEKYPMVIVDSIEEEPVVIEGVQIPVDTSKENPNNIEYDNLYLDMNGIIHPCFHPEDRPSPTSFDEVFECMFDYIDRLFNMVRPRKLLYMAIDGVAPRAKMNQQRSRRFRAAKDASDAAAEEARLREEFEQEGRKLPPKEESQTFDSNVITPGTDFMAVLSIALQYYVHLRLNNDPGWQNIKVILSDANVPGEGEHKIMSYIRLQRNLKGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQDKCFLCGQMGHMAANCEGKAKRKAGEFDEKGDAIVAKKPFQFLNIWTLREYLEYEMRIPNAPIEIDFECMVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLIAVYKKEFREFGGYLTNGSTINLSRVEHFIQAVGSYEDKIFQKRARLHQRQTERIKREKAQARRGDDAEPQSQPETLVAVSRFHGSRLASAPTPSPFQQSGHCNSHVSASARKDNKEAFERPNKVARFSGATVSAAVVEAENNLEIDAQDNKEELKTKLKGILREKSDVFNSNNAEEDKIKLGEPGWKERYYEEKFSAQTPEELEAIRRDVVLKYTEGLCWVMHYYYEGVCSWNWFYPYHYAPFASDLKGLGELDISFKLGTPFKPFDQLLGVFPAASSHALPEPYRKLMTDPNSPIIDFYPIDFEVDMNGKRFAWQGIAKLPFIDEVRLLAEVQKIENLLTPEEKRRNAIMFDLVFVNSCHPLSACISTLDNRCKNMPNSERAVVKERINPDERDTCSGGMNGYISLCGGEPCPPIFRSPVASMEDIMDNHVICAIYRLPDAHKHIARPPPGVKFPEKIVGLGDLKPDPVLWHEDSGGRRYHGDNGRKNPPGSISGRELGDAAHRLVVNSLQAKVGTNGYRNPHNGPPISYPAPVGHHRQPVPSYGYESQAGYVAMPPPISAPSLQGRPQFAPYNAQQYGYNQTYPPPPVVYNPRQQSNSYERNEYQNPRSHQYERNHHQGSGGSSRHGYHQSSGNNHNARYNNNNNNNSQGAYGSHHHEASHHSQNFQPSRGHQNWTPRGNRDSGHHHSSNQYSLLDRRGNRNPMPPPGYSRK 1077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g0058 1077 MobiDBLite consensus disorder prediction 840 861 - -
Aed11g0058 1077 SUPERFAMILY Retrovirus zinc finger-like domains 258 283 IPR036875 GO:0003676|GO:0008270
Aed11g0058 1077 Coils Coil 122 142 - -
Aed11g0058 1077 MobiDBLite consensus disorder prediction 879 907 - -
Aed11g0058 1077 Pfam Xrn1 helical domain 325 827 IPR041412 -
Aed11g0058 1077 MobiDBLite consensus disorder prediction 449 480 - -
Aed11g0058 1077 MobiDBLite consensus disorder prediction 413 437 - -
Aed11g0058 1077 PIRSF Exonuclease_Xrn2 1 1054 IPR017151 GO:0004534|GO:0005634|GO:0006139
Aed11g0058 1077 PANTHER 5'-3' EXORIBONUCLEASE 1 976 - -
Aed11g0058 1077 MobiDBLite consensus disorder prediction 413 432 - -
Aed11g0058 1077 PANTHER 5'->3' EXORIBONUCLEASE 1 976 IPR027073 -
Aed11g0058 1077 Pfam XRN 5'-3' exonuclease N-terminus 1 253 IPR004859 GO:0003676|GO:0004527
Aed11g0058 1077 Gene3D - 616 713 - -
Aed11g0058 1077 MobiDBLite consensus disorder prediction 130 157 - -
Aed11g0058 1077 MobiDBLite consensus disorder prediction 981 1019 - -
Aed11g0058 1077 Coils Coil 500 527 - -
Aed11g0058 1077 MobiDBLite consensus disorder prediction 941 1077 - -
Aed11g0058 1077 CDD PIN_XRN1-2-like 51 312 - -
Aed11g0058 1077 Pfam Zinc knuckle 262 276 IPR001878 GO:0003676|GO:0008270
Aed11g0058 1077 ProSiteProfiles Zinc finger CCHC-type profile. 262 276 IPR001878 GO:0003676|GO:0008270
Aed11g0058 1077 Gene3D - 1 135 - -
Aed11g0058 1077 Gene3D - 148 385 - -
Aed11g0058 1077 MobiDBLite consensus disorder prediction 130 151 - -
Aed11g0058 1077 MobiDBLite consensus disorder prediction 1029 1043 - -
Aed11g0058 1077 SMART c2hcfinal6 262 278 IPR001878 GO:0003676|GO:0008270
Aed11g0058 1077 MobiDBLite consensus disorder prediction 453 470 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g0058 Aed-Chr11 412129 424585 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g0058 11 412129 424585 Aed11g0058 11 412129 424585 ECH