Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g0031 ATGGTTACTACTGCTAAATCTCCAAACCACCACTCGCCGCCTAGTGCTCCGTCACCGGCGCAGCCCGGGGAGGGAAACAACCCTAAGTTCCCGCGAAAAAATCTTCCCTCGCCGTGGGCTCAGGTTGTTCGCGGCGGCGAGCCGGAAACGGCGGGCGGCATTCACCAATCGCCGCCGTCATCGTCTTCTTCGTCATCGTCCCTGACTGCTGACCAGGCCCCGTCATCGGAGGTGGTGCCGGCGTTGTTGCCGGTGGATAATTCTGATTCGGTTGATGTTGTAGATAGTTCCGATGGCGCTGAGGCCAATGCGGATCGTTCTAAAAAGCCCGTTTGGAACAAGCCCTCAAACGGCGTCGTTGTGGAGACTGGGCCTGTAATGGGCGCTGCTGAATCATGGCCCACTTTGCTTGCGTCCACCAAAGGTTCTGCTAAATTGTCAGCTGAATCGTCCTCCAAGACTGTTACTAATGATGGATCACGGTCACTCTCCACTTCTCAGGGGCCAATGACTTTGCAATCTCCTCCTCCAAAACAAGCTACTACTAATGCAAAACCTAATTCTGCACCAAATTATAATGTGCCTAGTAGACAAAGATTGATGAAGCGAGTAGGTGGCAGCAGCATTGGGTCTGGTTCTTCACAGAACAACTTCTCCAACCCTCCCCCACCACCGCCGCCCCCTCCTTTTCCTGTATACCAGCTCCCACCAGTTAGCTATGGTAATATGGTACCGGGGGTCCCTGACCCTGCACCTAGAGATCATTACCGGAACAATAACTGGGATGCAAGACCAGTGGTAGGGGGTTTTGTGCCGGCAGTGAATGAATATCGGGGTTCCTCTCGTAGGGGTTATTTTGGGCCTCATCCACGAGGAGATGGTTCCTATCATAATAGTTATGGTAGTAGCAGGCGTGATCATCAAGATCGTGGAAGTTATGTGAATACTAGAGATGCTTTTGTACCTCAAGCAAGGATGCCTCCTAGAGGATTACTGAGGCACCCACCACCTAGTACTGCTGCATTTGTGGGCCCTCAGCCTATTGGACCATTTGCTAACCCCATTGGTTTTCCTGAGTTCTATTACTATCAACCAGTAACAGTGGAACAGTTTACGGGTATGCCATTCTTCACTCACAGCCCTCCTCCTTCAACGTTCTTCCCTGCTGCGGAATCCCCTCTCTCTAGTATGATAGTCTACCAAATTGAATATTACTTTAGTGATGCTAATTTAGTGAAAGATGAGTTTCTAAGGTCTAAAATGGATGAACAAGGTTGGGTTCCTGTTACTTTGATAGCAGAATTCCCTCGAGTTAAAAGTTTGTCAACGAATGTTCAATTGATATTGGATTCTCTCAGAACTTCCACGATTGTGGAAGTGCAGGGTGACAAGCTGAGGAGACTTAATGAGTGGATGAGATGGGTGTCCTCTTCGCGACGGTCCAGTTCTGGTTCAATATCTTCTAGTGGATCAAGATATAGTAATCACCTAACTACTAATTTTCAAACTATCACCTTGGAAGGAACAACTGAGGATGAAGGTCCAACACAACCTCGTAGTCAGTCTCAACTCCCAAATGGTGGCAATGCTACGAGTAGCTGTTGTTGA 1608 0.4894 MVTTAKSPNHHSPPSAPSPAQPGEGNNPKFPRKNLPSPWAQVVRGGEPETAGGIHQSPPSSSSSSSSLTADQAPSSEVVPALLPVDNSDSVDVVDSSDGAEANADRSKKPVWNKPSNGVVVETGPVMGAAESWPTLLASTKGSAKLSAESSSKTVTNDGSRSLSTSQGPMTLQSPPPKQATTNAKPNSAPNYNVPSRQRLMKRVGGSSIGSGSSQNNFSNPPPPPPPPPFPVYQLPPVSYGNMVPGVPDPAPRDHYRNNNWDARPVVGGFVPAVNEYRGSSRRGYFGPHPRGDGSYHNSYGSSRRDHQDRGSYVNTRDAFVPQARMPPRGLLRHPPPSTAAFVGPQPIGPFANPIGFPEFYYYQPVTVEQFTGMPFFTHSPPPSTFFPAAESPLSSMIVYQIEYYFSDANLVKDEFLRSKMDEQGWVPVTLIAEFPRVKSLSTNVQLILDSLRTSTIVEVQGDKLRRLNEWMRWVSSSRRSSSGSISSSGSRYSNHLTTNFQTITLEGTTEDEGPTQPRSQSQLPNGGNATSSCC 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g0031 535 PANTHER LUPUS LA PROTEIN-RELATED 7 529 IPR045180 -
Aed11g0031 535 ProSiteProfiles La-type HTH domain profile. 388 477 IPR006630 -
Aed11g0031 535 SUPERFAMILY "Winged helix" DNA-binding domain 387 475 IPR036390 -
Aed11g0031 535 MobiDBLite consensus disorder prediction 218 234 - -
Aed11g0031 535 MobiDBLite consensus disorder prediction 54 74 - -
Aed11g0031 535 PANTHER LA-RELATED PROTEIN 1B 7 529 - -
Aed11g0031 535 MobiDBLite consensus disorder prediction 139 234 - -
Aed11g0031 535 MobiDBLite consensus disorder prediction 280 312 - -
Aed11g0031 535 MobiDBLite consensus disorder prediction 509 535 - -
Aed11g0031 535 SMART la 392 468 IPR006630 -
Aed11g0031 535 MobiDBLite consensus disorder prediction 139 195 - -
Aed11g0031 535 CDD LAM 396 467 - -
Aed11g0031 535 Gene3D - 388 478 IPR036388 -
Aed11g0031 535 Pfam La domain 398 453 IPR006630 -
Aed11g0031 535 MobiDBLite consensus disorder prediction 1 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g0031 Aed-Chr11 199443 204378 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g0031 11 199443 204378 Aed11g0031 11 199443 204378 ECH
Aed11g0031 11 199443 204378 Aed9g0203 9 1430554 1435549 PCT