Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g0026 ATGGATGATAACTTTGATGAAAGTTTTGGAACAGACTATTCAGATATGTGGATACATCTAGATTTTCAATTTATAGGGAATGGTTTTATTTCAGCTGATTACGAGGATGGAGGTTGGGATCGTGATAGGGGAAATGCTAGGGGCAGGGGTAGAGGAAGAGGACGTGGCTTTCGTGGTCGTGGAAGGGGAGGGTACAATGGACCCCATGTTGATATGCAGCAAGATGGAGGATACAACCAAGATTTACCTCAAGGCCGTGGGTATACCACCGCTAAAGACTGTGAGATGTTCTGTTTTCTTCATATTCGGTTTTGTAGATCTGAGGCGAGACATTCCATTCACCATGTTGAGACTAATACTGTCGTGGCCGTGGCAGGGGAGGAGGATATCGTGGAAGGGGTCGCGGCTTTAGATCAAATGGGCAAATCCAAGCAGCTGCCTAAGGCAACGAATCGAAAGAAGATGAGTGAAGACGTAGAGATGAAAGATCAGGCAACGCCTTCACACTCGGTTTCTTCAGTTCCCCCGTCTACATTGCACCATTTGAAGGAAATAGCATCAATTATTGAAACCGGTTCGTACTCAAAGGAAGTTCGTCGAATTGCTCGTGCCCTGCGCCTTACATTTGCATTGAGGCGTAAATTGACAGCGCCGGTTCTCTCATCTTTTCTCGATTATGTTCTTACTCCCGCTTCTGAACCTCACTCTAGATTATCCTCTTATCTTCCTAATCCTAAGGAAGGTGATCGAGAGATGGAAGTGGACAGTGCAACATCTGCTATTCAAACCCCGGCCACCGCGGCGAAGCACTTGTTGCCTGAGCTAGAAATCTACTGTTACCTCCTTGTCCTACTTTTTCTGATTGACCAGAAAAGATACGACGTGGCCAAAGCTTGTTCCTCAGCAACCATTGTTCGGCTAAAGAACCTGAATCGAAGAACTGTTGATGTTATTGCATCTAGACTGTACTTTTATTACTCATATAGCTATGAGCTCACAGGAAATCTTGCTGAAATTCGAGGCAACCTACTTGCATTGCACCGGATTGCTACCCTGCGCCATGATGAGCTGGGTCAGGAAACCCTTCTGAATCTGTTACTTCGTAACTACCTACACTACAACCTATATGATCAGGCAGAGAAGTTGAGGTCTAAGGCTCTGCGTTTTGAGGCACATTCAAACCAGCAGTTCTGTCGTTATCTCTTCTACCTTGGGAAAATTCGGACAATTCAGCTGGAGTACACCAATGCAAAAGAGTCACTCTTGCAGGCTGCTCGTAAAGCTCCTGGTGCAGCACAGGGTTTTCGGATTCAATGTAACAAGTGGGCTGTGATAGTGCGTTTATTATTGGGAGAAATACCTGAGAGGACTGTCTTTATGCAGAGAGGAATGGAGAAATCTTTGAGGCCTTACTTTGAGCTTACTAATGCTGTCCGGATTGGTGAGTTGGAGCTGTTTAGGAATGTTGCAGAGAAGTTTGGTAGGACTTTCAATAGAGACCGAACTCATAATTTGATTGTTCGGCTCCGTCATAATGTTATCAGGACTGGTTTACGCAACATCAGCATATCATATTCACGCATCTCGCTAACTGATGTAGCTAAAAAGTTGAGGTTGAACTCTGCAAGTCCTGTTGCTGATGCTGAGGGCATTGTTGCAAAGGCTATCCGTGATGGTGCTATTGATGCTTCATTGGATCATGCCAACGGCTGGATGGTATCCAAGGAAACTGGAGATATTTACTCTACAAATGAGCCTCAGTTGGCATTTAATTCTCGGATTGCCTTTTGTCTTAACATGCACAATGAGGCTGTTCGAGCACTGCGTTTTCCACCAAACACACACAAGGAAAAGGAAAGTGCCGAGAAGAGGAGAGAGAGGCAACAGCAAGAACAAGAACTGGCTAAGCATATCGCAGAGGAAGATGATGATGACTTCTGA 1941 0.4518 MDDNFDESFGTDYSDMWIHLDFQFIGNGFISADYEDGGWDRDRGNARGRGRGRGRGFRGRGRGGYNGPHVDMQQDGGYNQDLPQGRGYTTAKDCEMFCFLHIRFCRSEARHSIHHVETNTVVAVAGEEDIVEGVAALDQMGKSKQLPKATNRKKMSEDVEMKDQATPSHSVSSVPPSTLHHLKEIASIIETGSYSKEVRRIARALRLTFALRRKLTAPVLSSFLDYVLTPASEPHSRLSSYLPNPKEGDREMEVDSATSAIQTPATAAKHLLPELEIYCYLLVLLFLIDQKRYDVAKACSSATIVRLKNLNRRTVDVIASRLYFYYSYSYELTGNLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKALRFEAHSNQQFCRYLFYLGKIRTIQLEYTNAKESLLQAARKAPGAAQGFRIQCNKWAVIVRLLLGEIPERTVFMQRGMEKSLRPYFELTNAVRIGELELFRNVAEKFGRTFNRDRTHNLIVRLRHNVIRTGLRNISISYSRISLTDVAKKLRLNSASPVADAEGIVAKAIRDGAIDASLDHANGWMVSKETGDIYSTNEPQLAFNSRIAFCLNMHNEAVRALRFPPNTHKEKESAEKRRERQQQEQELAKHIAEEDDDDF 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g0026 646 ProSiteProfiles PCI domain profile. 398 579 IPR000717 -
Aed11g0026 646 Pfam Proteasome regulatory subunit C-terminal 579 645 IPR013586 GO:0000502|GO:0030234|GO:0042176
Aed11g0026 646 MobiDBLite consensus disorder prediction 611 639 - -
Aed11g0026 646 SUPERFAMILY "Winged helix" DNA-binding domain 505 580 IPR036390 -
Aed11g0026 646 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3 155 646 - -
Aed11g0026 646 SMART PINT_4 504 597 IPR000717 -
Aed11g0026 646 MobiDBLite consensus disorder prediction 611 646 - -
Aed11g0026 646 Pfam PCI domain 470 575 IPR000717 -
Aed11g0026 646 Gene3D - 380 576 - -
Aed11g0026 646 Coils Coil 613 640 - -
Aed11g0026 646 MobiDBLite consensus disorder prediction 43 75 - -
Aed11g0026 646 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 504 597 - -
Aed11g0026 646 MobiDBLite consensus disorder prediction 150 164 - -
Aed11g0026 646 MobiDBLite consensus disorder prediction 142 176 - -
Aed11g0026 646 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3 155 646 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g0026 Aed-Chr11 175496 181239 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g0026 11 175496 181239 Aed11g0026 11 175496 181239 ECH
Aed11g0026 11 175496 181239 Aed9g0199 9 1414437 1418354 PCT