Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g0008 ATGCATATGAATGGATTCAGAGCAAGGGCTTTTCTGCGCTCAATCTCATTTTGTAAATCAAAGTGGCATCATCACCATGTCCATGAAGGTCAAATCCATTTCTCTCAAAATCTCACCACCTCCACAGCAGGTCCTGAGTTTATGGAACCGTCTATTCAGAGGCAAGTTGTCGAGGCACTCAGTTCGGGTGACAGAAAGAAGGCTTCAGACTTACTTTCGGATTTTGGTTCCAGAAGCCACTCATTAACAGCTGATGATTTTGTTCATGTTTTTAAGTACTGCGCACGCTCTCCTGATCCTATGTTTGTTATGGAGATTTGGAGATTCATGGAGTTAAAAGGTGTTGGCATGAACAATATATGCTCATTTCTTATGATGCAGGCCCTTTGTAATGGGGGTTACTTGGAAGAGGCCTTTGACATTGTGGATTATCTTGGAGGAAGTCAATGTCTCTATCCAGTTCTCCCACTGTACAATAGTCTCTTAAGATCCTGCACAGAAATGCAGAATATAATTCAAGCAAGCAGATGTTTGGAGTTAATGGAAAAGAAGATGGTAGGGAAGAATGAAGTTACATATTCTCAAGTTTTGCAGAAAAACTTGCCTGCAGCCCATCTCATTTGGCAGGAGTATATTAAAAACTATAGCATGAGTATCATTGCTCTGAATAGATTCATTTGGTCATTTACAAGGTTAGGAGATTTAGAATCTGCATATAAAATACTACTACAAATGGTGTCATTAGCCATCAGGGGAAACATTTCTATTGCTAGAACAGTTTATGGGAAGTTGGATTCTACTAGACTGGACATCCCTGTGCCTTCAAATAAGGGTCTAAGCTCAACCATATTGGACTTGAATGACAACAAAAATTTGGACTCTTGTATACACTCTCCTCTTATGTACATACCTGACAGTATTTCTGCAAGTATAGAGCAACAGATTATTTGTATGGGGAATAAAAAAGCTAAGAGTACTGAATTATCTGGGCTGAATGGACAAAAACACCCACTGCTTAAGATGGCGTTGAGGTGGTCCTTTAATGATATAATACATGGGTGTGCAAAACAAGAAAATCATATGCTTGCAAGGAAGCTTATGTTACAGATGAATAATCTTGGTTTGCAGCCATCCAGACATACATATAATGGCATTATTAAAGTTGTTTCTCAGAGAAGTTTTGGGGATGCAATAAGAGTGTTGAAAAAGATGCAGCAGAAGAATTTGAAGCCATATGATTCAACTCTAGCAACACTTTCAATCACTTGCAGCAAAGCACTACAACTAGATTTAGCTGAGGCTTTTCTGAATCAGATTTCTGAATGTCTATATCCACATCCTTATAATGTTTTGCTAGCATCATGCAATCAACTGAATCAACCTGAACGTGCTATGCGAGTGTTTGCCAAGATGGAGCAGAAAAAAGTTTTACCTAATATCAGGACATGCGAGCTTCTACTTTCATTATTTGGTGTTGTAAATGCCCATTATGAAGACTGTAATATGCAGTCACAGGTGGATGCTGCTAAAAGAATAAATGCTATAGAAAAGTATATGGCCAAAAATGGCATTCAGCATAGTCACATTTCAATGAATAATATATTGAGAGCCCTTGGAGAAGAAGGAATGATAAGAGAGTTGATCCAGTATTTACATGTGGCAGAGAATCTTTTCATTTATAGAAACCCTTCATTGGGAACACATATGTACAACACAGTGTTACATTATCTTGTTGAAGCCAAGGAAAGTGACATGGCGATTGCAATTTTCAAGAAGGTGAAGTTATGTGGCTGTCACCCTGATTCTGAAACATACAATATAATGATTGACTGTTGTACCATCCTAAAAAGTTACAGATCTGCTTGTTTGCTGCTTTCAATGATGATACGGAAAGGGTTTCGTCCCATGATTTGTTCATATACCGCTATAATTGAGATTTTGTTGGAAGATGAGAACTTTAATGAAGCCCTGAATCTCTTGAAACAAGTCATATTGGACGGCATCCAACCTGATGTACTGCTATTTAATACTGTTCTTAAAGAAGCATGCTACAAGGGAAGGATCGATGTAATTGAGTTTATTGTGGAGTGTATGCACCGAGAGAAAGTTCCCCCTGATACAAGAACATGCGGCTATGTCTTCTCTGCATATGTTAATTCTGGTTTTCACAATACAGCAATTGAAGCATTGCAGGTTTTAAGTTTGCGTATGATGTCTGAAGATGGCAACATACTTAGAGAGAAGAAAAATTTTGTGGATGAATTCATCCTATCTGCAGATTTGGCTGTTGAGTCACAGATACTCAAATTACTTGAAGATTCTGAAGATGAACTTGCAGTTGGGTTGTTGAATTTAAGATGGTGTGCCATAGCTGGGTTTCCAATCTGCGAGTCAGCTGATCAAAGCCTATGGGCTAAAAGACGGGAAGGGATGCAATTGTGA 2442 0.3849 MHMNGFRARAFLRSISFCKSKWHHHHVHEGQIHFSQNLTTSTAGPEFMEPSIQRQVVEALSSGDRKKASDLLSDFGSRSHSLTADDFVHVFKYCARSPDPMFVMEIWRFMELKGVGMNNICSFLMMQALCNGGYLEEAFDIVDYLGGSQCLYPVLPLYNSLLRSCTEMQNIIQASRCLELMEKKMVGKNEVTYSQVLQKNLPAAHLIWQEYIKNYSMSIIALNRFIWSFTRLGDLESAYKILLQMVSLAIRGNISIARTVYGKLDSTRLDIPVPSNKGLSSTILDLNDNKNLDSCIHSPLMYIPDSISASIEQQIICMGNKKAKSTELSGLNGQKHPLLKMALRWSFNDIIHGCAKQENHMLARKLMLQMNNLGLQPSRHTYNGIIKVVSQRSFGDAIRVLKKMQQKNLKPYDSTLATLSITCSKALQLDLAEAFLNQISECLYPHPYNVLLASCNQLNQPERAMRVFAKMEQKKVLPNIRTCELLLSLFGVVNAHYEDCNMQSQVDAAKRINAIEKYMAKNGIQHSHISMNNILRALGEEGMIRELIQYLHVAENLFIYRNPSLGTHMYNTVLHYLVEAKESDMAIAIFKKVKLCGCHPDSETYNIMIDCCTILKSYRSACLLLSMMIRKGFRPMICSYTAIIEILLEDENFNEALNLLKQVILDGIQPDVLLFNTVLKEACYKGRIDVIEFIVECMHREKVPPDTRTCGYVFSAYVNSGFHNTAIEALQVLSLRMMSEDGNILREKKNFVDEFILSADLAVESQILKLLEDSEDELAVGLLNLRWCAIAGFPICESADQSLWAKRREGMQL 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g0008 813 Pfam PPR repeat family 567 612 IPR002885 -
Aed11g0008 813 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 444 478 IPR002885 -
Aed11g0008 813 Gene3D Tetratricopeptide repeat domain 50 311 IPR011990 GO:0005515
Aed11g0008 813 Gene3D Tetratricopeptide repeat domain 447 618 IPR011990 GO:0005515
Aed11g0008 813 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 566 600 IPR002885 -
Aed11g0008 813 TIGRFAM PPR: pentatricopeptide repeat domain 448 479 IPR002885 -
Aed11g0008 813 TIGRFAM PPR: pentatricopeptide repeat domain 569 602 IPR002885 -
Aed11g0008 813 TIGRFAM PPR: pentatricopeptide repeat domain 604 635 IPR002885 -
Aed11g0008 813 Gene3D Tetratricopeptide repeat domain 344 446 IPR011990 GO:0005515
Aed11g0008 813 Gene3D Tetratricopeptide repeat domain 619 754 IPR011990 GO:0005515
Aed11g0008 813 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1 807 - -
Aed11g0008 813 Pfam PPR repeat 125 143 IPR002885 -
Aed11g0008 813 Pfam Pentatricopeptide repeat domain 624 680 IPR002885 -
Aed11g0008 813 Pfam Pentatricopeptide repeat domain 448 491 IPR002885 -
Aed11g0008 813 Pfam Pentatricopeptide repeat domain 347 390 IPR002885 -
Aed11g0008 813 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 601 635 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g0008 Aed-Chr11 53286 63757 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g0008 11 53286 63757 Aed11g0008 11 53286 63757 ECH