Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aed10g2172 | ATGGATCGCTTCTTCCCGGAGAAAATTCTCGGTGAGATTTTCTGGGATGAACCACTTTTGACCACTGATCAAAGTGATGATCCTCCTCCTCCTCCTCCTCCTGCAACAATTCAAAGTGCCTTTGTTCAATATAGAGACCTACTACCCAGAAGAATTAATTCTCTAAACGGGCCAAGCTTCCAGAGCATGAGTAAGAGAATGCTTTCGTTCATGAGAAAACGTTGGCCTGCTATGGAGAGAAATAACAACGTACAAGAGAATGAGAGAGATCGTAGTTTCAGGCACATGATTAATGAGAGAATGAGGAGACAGAGGCAGAGGGAGTGTTGCTTGGCCCTGCATTCAATGTTACCACATGGAACCAAAACGGATAATAATTCTGTAATTCAAATGGCAGCCAAGGAGATTGTACGGCTGCAAGGATGCAGAGAAGAGTTGCAAAGGAAAAATGTTGAGCTTGAAGTTGGGGGAAATCAAGTTCAATATTTGAGAATTCCACATCCTGAGTCTGCAATTGATTCTATGGTTGAGAACCTCAAATGCTTGAAATACCAAGGAGTCGATACCACAAGCGTCAAATCAACTTTCTCCCCGCAGGAGTTGTTTGCAGTGTTAGAGATACAAAATCATGATGAGGTTGCATATGCAGATGTGGAAAGCGCTACTTGGAGAACACATGATCGGAAGCTTCATTCTCACGGCCGGGAAGGTTCAAATAAAAAGCAAAAGACTATACATGAAGCGTTAGACCAAATTTAG | 759 | 0.4269 | MDRFFPEKILGEIFWDEPLLTTDQSDDPPPPPPPATIQSAFVQYRDLLPRRINSLNGPSFQSMSKRMLSFMRKRWPAMERNNNVQENERDRSFRHMINERMRRQRQRECCLALHSMLPHGTKTDNNSVIQMAAKEIVRLQGCREELQRKNVELEVGGNQVQYLRIPHPESAIDSMVENLKCLKYQGVDTTSVKSTFSPQELFAVLEIQNHDEVAYADVESATWRTHDRKLHSHGREGSNKKQKTIHEALDQI | 252 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aed10g2172 | 252 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 90 | 139 | IPR011598 | GO:0046983 | |
| Aed10g2172 | 252 | PANTHER | TRANSCRIPTION FACTOR BHLH92 | 1 | 227 | - | - | |
| Aed10g2172 | 252 | PANTHER | TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED | 1 | 227 | IPR044658 | - | |
| Aed10g2172 | 252 | MobiDBLite | consensus disorder prediction | 227 | 252 | - | - | |
| Aed10g2172 | 252 | Gene3D | - | 79 | 155 | IPR036638 | GO:0046983 | |
| Aed10g2172 | 252 | SMART | finulus | 96 | 145 | IPR011598 | GO:0046983 | |
| Aed10g2172 | 252 | Pfam | Helix-loop-helix DNA-binding domain | 94 | 140 | IPR011598 | GO:0046983 | |
| Aed10g2172 | 252 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 87 | 156 | IPR036638 | GO:0046983 | |
| Aed10g2172 | 252 | Coils | Coil | 129 | 149 | - | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Aed10g2172 | 1 | 208 | Basic Helix-Loop-Helix Transcription Factor Gene Family | AT5G43650 | 36.444 | 1.64e-32 | 116 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aed10g2172 | - | - | gmx:100815874 | 339.347 |