Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1921 ATGGGTTTGAGTTCTAAGCAGGTTTCTAGCAGTGGACTTGATTGGAAACAAACATTATTGGAGGCTCAAAACTTGGAACTTCCAAAGTCTAATCTGATGAGAAAACAACAACAGCAACAACAGCAACAAACTCAGCCTTCAGAGTCTTTGAAGTGTCCAAGATGTGATTCCAGCAACACCAAATTTTGTTACTACAACAACTACAACAAGTCTCAGCCACGCCATTTCTGCAGGGCTTGCAAGAGGCACTGGACTAAAGGTGGAACTTTACGCAATGTTCCAGTTGGTGGTGGAAGGAAGAACAAAAGGGTCAAAAAATCATCAATCACTCCAATTACAACAACAACATCTTCTACCATCCCAATCACAACCACAGCCGCCACTTCTACTTGCACTGCCACTCTCACAACCTCAATTGGCAACAACATGGATGCTATGTTGGGTAGTAGTAGCCACATGACAAATATTCATCAAACTCCTCTTGCAGATGATCAACACAAGAACATGTCTTCCTCTCTCTACCAAGCTCTAATTCGTCCACCACCTTTGCTGCTACAGCAGAATCTGATCAACACAAGAGCCTTAGAAGGCAAAGATTTTAGTATTGGTATTGGTATTGGTAATGCTTCAGATTCAAGCAAAAGGGTCCCAAATTTCTGA 660 0.4212 MGLSSKQVSSSGLDWKQTLLEAQNLELPKSNLMRKQQQQQQQQTQPSESLKCPRCDSSNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKRVKKSSITPITTTTSSTIPITTTAATSTCTATLTTSIGNNMDAMLGSSSHMTNIHQTPLADDQHKNMSSSLYQALIRPPPLLLQQNLINTRALEGKDFSIGIGIGNASDSSKRVPNF 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1921 219 ProSitePatterns Zinc finger Dof-type signature. 52 88 IPR003851 GO:0003677|GO:0006355
Aed10g1921 219 MobiDBLite consensus disorder prediction 32 53 - -
Aed10g1921 219 Pfam Dof domain, zinc finger 49 102 IPR003851 GO:0003677|GO:0006355
Aed10g1921 219 ProSiteProfiles Zinc finger Dof-type profile. 50 104 IPR003851 GO:0003677|GO:0006355
Aed10g1921 219 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 35 155 IPR045174 GO:0003700|GO:0006355
Aed10g1921 219 PANTHER OS06G0284500 PROTEIN 35 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g1921 Aed-Chr10 23480467 23481747 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g1921 32 120 C2C2-Dof Transcription Factor Family AT1G51700 56.180 8.03e-32 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Aed10g1921 zf-Dof 9.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1921 - - gmx:100818111 294.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g1921 10 23480467 23481747 Aed9g0596 9 4139445 4140320 PCT