Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1875 ATGGAACAAGAAGGAGAAAAAAGGAGAGAGCAGAAAAGACAACGAGTTCAACAACAACAACCTCAATTTCCTCAGCAGCAGCAGCAGCGTCAGAAATGTCCACGGTGCGATTCCATAAACACCAAGTTCTGCTACTTCAACAACTACAGCCTCTCGCAGCCACGTCACTACTGCAAGACGTGTAAAAGGTACTGGACTCAGGGTGGAACCTTCAGGAACATACCCGTTGGTGGTGCCTCCCGCAAAGTCAATAAACGATCCAAAACAATTTCTTCTTCAAATTTGCTCACACAGCAGCCACAGCAAAATTTGTTGAGGCCTTCTCCTTCTGCACCACTCGCTCCCATTGTTCATTCATCAACTACTCCTTATTATAATAATAATAATAATAATAATAATCTTGGTAGTGGAAGTGGCTTTTATAATTTCTCTTTTCGATCCATGATGAACACATCATCACAGCCTAATAATTTCAGCCAGTATCTGAAACTTGGTGGTGGTGATGTTAACGACGTTGCTGGCTCTTGTTCTTCTAATTCTCCTTCTCTTGTGTCTGGCTTCAACGCTGCTTATTCTTCTCGTCCACCGCGATTCCAACAACAACGTTTGGTTGCAACAAACATGGCTAGTGGAAGTGGTGCTGGTGCTGTTTCTCACTCTGCAGGCTATTATCGCCCACAAAGCTTGATCAACAACAACAATATTGTTTCAACAAGCACTACTACAAACCATAGGGCTAGTGATGCCTCTTTTTGGAATGCTGCTACTATCAACAATGTCAGTGGAAACTCCGATCAGAACAATGTCAAAAGGGGTTCTTCTTCTTCTTCTCCAAATCATCACTGGCTTCATCGCCCTGGCTTTGGTCCTTCTCCGTAA 879 0.4346 MEQEGEKRREQKRQRVQQQQPQFPQQQQQRQKCPRCDSINTKFCYFNNYSLSQPRHYCKTCKRYWTQGGTFRNIPVGGASRKVNKRSKTISSSNLLTQQPQQNLLRPSPSAPLAPIVHSSTTPYYNNNNNNNNLGSGSGFYNFSFRSMMNTSSQPNNFSQYLKLGGGDVNDVAGSCSSNSPSLVSGFNAAYSSRPPRFQQQRLVATNMASGSGAGAVSHSAGYYRPQSLINNNNIVSTSTTTNHRASDASFWNAATINNVSGNSDQNNVKRGSSSSSPNHHWLHRPGFGPSP 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1875 292 MobiDBLite consensus disorder prediction 16 31 - -
Aed10g1875 292 MobiDBLite consensus disorder prediction 261 292 - -
Aed10g1875 292 Pfam Dof domain, zinc finger 29 85 IPR003851 GO:0003677|GO:0006355
Aed10g1875 292 MobiDBLite consensus disorder prediction 1 31 - -
Aed10g1875 292 MobiDBLite consensus disorder prediction 1 15 - -
Aed10g1875 292 ProSitePatterns Zinc finger Dof-type signature. 33 69 IPR003851 GO:0003677|GO:0006355
Aed10g1875 292 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 5 291 IPR045174 GO:0003700|GO:0006355
Aed10g1875 292 MobiDBLite consensus disorder prediction 261 281 - -
Aed10g1875 292 ProSiteProfiles Zinc finger Dof-type profile. 31 85 IPR003851 GO:0003677|GO:0006355
Aed10g1875 292 PANTHER DOF ZINC FINGER PROTEIN DOF5.4-LIKE ISOFORM X1 5 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g1875 Aed-Chr10 23089379 23090257 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g1875 16 98 C2C2-Dof Transcription Factor Family AT1G51700 66.265 2.52e-35 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Aed10g1875 zf-Dof 1.7e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1875 - - gmx:100814555 261.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g1875 10 23089379 23090257 Aed9g0553 9 3859809 3860693 PCT