Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1874 ATGTTTGGTGGTAGTAACAGTGAGAAAATGGTAGGAGTCACCCCTCAAACAGCGTCTAACAAATGGACACAGATACATGATCAGAAGGCCCCTATGGGAAAAGCCATGGAAAAACCAAGCCAAGATCTGGTTCAGCTGCAGCAACAAGCCCTCAAGTGCCCTCGCTGCGACTCTTCCAACACCAAGTTCTGCTACTACAACAACTACAGCTTGTCACAGCCTAGGCACTTTTGCAAAGCCTGCAAGCGTTACTGGACAAGAGGTGGCACTCTCAGAAACGTTCCCGTTGGTGGCGGCTGCAGAAAAAACAAGCGTCTCAAGCGTCCACACGGTTTTTCATCTGGGTTTAGTGAGAATAATAATAATGGGTTTAGTACTTCAAACAGCAACAACAACTTTCTTTCTGCTTATAACTCCATCTTTGGTTCTTCTTCTTCCTCAACTTGTGCACCCTCAACTCCTGTTATGGCTTCCTTGCTGAGTTCCACTCTTCTTCAACACAAGTTTATGGGTGGTGGTGGTGGTGGTGGGGTGAAGGGTGATCATCAAGGTGGCAACACTTTCTTCCATGGCTTGGCACCGCTACAAGGGTTGCAAGTTGAAGGGAACAACAACAACAATATTGGTTCGAAAGAAGTGAAAGGTGAAGGACAAAACAGGTTTGAGTGGAGTAGTAATAATAACAACAACAATGGTGGTGGTGGTGGTTGTCAAAACCAGATGGAGCATGTGGGTTTGTCTGACCCTAATTCGCTTTATTGGAACACTGCTTGGAGCACTGATCAACCTAACATTGGTCCTTCAGTCACTTCTCTGATCTAG 822 0.4599 MFGGSNSEKMVGVTPQTASNKWTQIHDQKAPMGKAMEKPSQDLVQLQQQALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRLKRPHGFSSGFSENNNNGFSTSNSNNNFLSAYNSIFGSSSSSTCAPSTPVMASLLSSTLLQHKFMGGGGGGGVKGDHQGGNTFFHGLAPLQGLQVEGNNNNNIGSKEVKGEGQNRFEWSSNNNNNNGGGGGCQNQMEHVGLSDPNSLYWNTAWSTDQPNIGPSVTSLI 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1874 273 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-LIKE 5 110 - -
Aed10g1874 273 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-LIKE 113 262 - -
Aed10g1874 273 Pfam Dof domain, zinc finger 49 105 IPR003851 GO:0003677|GO:0006355
Aed10g1874 273 ProSitePatterns Zinc finger Dof-type signature. 53 89 IPR003851 GO:0003677|GO:0006355
Aed10g1874 273 ProSiteProfiles Zinc finger Dof-type profile. 51 105 IPR003851 GO:0003677|GO:0006355
Aed10g1874 273 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 5 110 IPR045174 GO:0003700|GO:0006355
Aed10g1874 273 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 113 262 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g1874 Aed-Chr10 23082968 23084199 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g1874 1 109 C2C2-Dof Transcription Factor Family AT1G28310 58.716 3.01e-37 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Aed10g1874 zf-Dof 9.1e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1874 - - gmx:778101 219.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g1874 10 23082968 23084199 Aed9g0552 9 3852790 3855113 PCT