Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1536 ATGAAAGTGCTGACTGGGATGCAAAAAAGGTTGGGACAGAACAGCACCATCTTTAGAAGTAATGTGGGGGAATCCAACAGCATACAAAGATCTCTTAGGCCACAAGAACTTCTTTTTGGAAGGACAATTTTGCTGCCACACAGCATCAATCATTGTTCTTCTTCTGCTTCTGAACCTGCACCTGCACGTGCACCTTCATCTTCCTCTTCTCCTCGTGAAGTTACCTCTTCTGCAACACAACAACAACAACATGAAACTGATGATGAGGAACCATCAAGGAAAAAACATACCTCATCACAACATGATGATGATGATGTCTCACATCAAACAACAGAGGATTTGAAATCCCCAACAACATCTTCAGGCATATCGGAGAATCCTAAGACCCCCTCAGCTGAAACAGAGACATCAATACCGAAAGAACAAAGTGAGACGACGACAAGTGCTTCTGATGAAAAAACACCGAAGAAACCCGACAAGGTACTTCCTTGCCCGAGATGCAACAGCATGGACACCAAATTCTGCTACTACAACAACTACAACGTCAACCAGCCCCGCTATTTCTGCAAGAACTGCCAGAGATACTGGACCGCGGGAGGGACCACGAGGAATGTGCCGGTCGGAGCCGGCCGCAGAAAGAACAAGACTTGTTCTTCGGCAACCTCGCCATGCTACCGACACATAGTGATCCCAGAGGGGACTGTTTTCGGAAACAGAGCAACTGTTTTGAGTTTTGGTCATGATTCTCCTCCCATTTGTGATACAATGACATCTATGTTGAGCATTGTTGAGAGGGCAGCACAGAATTGTGTTGGTACTAGCGGTCACTCCGCGGGAGTTGCTTCTGTTGCAACCACTTCAACTTCAAGCCACACCGGCTCACATGAATCTGTGAACAAAAGCCTTGAAGGTTTCGCGCCTCAATCGCGGTACTTTCCGAGTTCTCATTGGCCTTATCATCCTCATATGGCTCCTCCTACATTTTTCCCACCAAACTATCCTTTACCATTCTACAACACACCACCATATTGGAGTTGCATGCCACCCTCTTGGAGTAACAACATTTCATGTATCTCACCTCAATCCTCTGTTAACAACTCTGTCTCTGCCTCTGCCTCCTCTGCCTCTACTTTGGGGAAACACTCAAGGGATGGAAACATCATTGCTTCATCCAATTTACAAAGAGGAATGCATCATGTCATGGAGCACAACAACAACAGCAACAATGGCTCGGAACATGGTTTCTTGTTCCCCAAGACTCTTAGAATTGATGACCCTAGTGAAGCTGCAAAGAGGTCCATTTCCATGTGGCCAAAACTAGGGATCAAGAATGATGGTGATAACAACAAGGCCAGTTCAGGAGGAGGCCTCTTCAGCAAGGCTTTTCCCTATCCATCTCCATCCAAGGGAAATGATGACATGAACCGTCATCGCACTGCAGAAGCATCGCCGGTGTTGCAAGCCAACCCCGCCGCTCTGTCGCGGTCTCTTACCTTCCATGAACAGACCTAA 1512 0.4696 MKVLTGMQKRLGQNSTIFRSNVGESNSIQRSLRPQELLFGRTILLPHSINHCSSSASEPAPARAPSSSSSPREVTSSATQQQQHETDDEEPSRKKHTSSQHDDDDVSHQTTEDLKSPTTSSGISENPKTPSAETETSIPKEQSETTTSASDEKTPKKPDKVLPCPRCNSMDTKFCYYNNYNVNQPRYFCKNCQRYWTAGGTTRNVPVGAGRRKNKTCSSATSPCYRHIVIPEGTVFGNRATVLSFGHDSPPICDTMTSMLSIVERAAQNCVGTSGHSAGVASVATTSTSSHTGSHESVNKSLEGFAPQSRYFPSSHWPYHPHMAPPTFFPPNYPLPFYNTPPYWSCMPPSWSNNISCISPQSSVNNSVSASASSASTLGKHSRDGNIIASSNLQRGMHHVMEHNNNSNNGSEHGFLFPKTLRIDDPSEAAKRSISMWPKLGIKNDGDNNKASSGGGLFSKAFPYPSPSKGNDDMNRHRTAEASPVLQANPAALSRSLTFHEQT 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1536 503 MobiDBLite consensus disorder prediction 489 503 - -
Aed10g1536 503 MobiDBLite consensus disorder prediction 50 162 - -
Aed10g1536 503 MobiDBLite consensus disorder prediction 50 82 - -
Aed10g1536 503 ProSitePatterns Zinc finger Dof-type signature. 164 200 IPR003851 GO:0003677|GO:0006355
Aed10g1536 503 MobiDBLite consensus disorder prediction 112 145 - -
Aed10g1536 503 PANTHER CYCLIC DOF FACTOR 2 38 503 IPR045174 GO:0003700|GO:0006355
Aed10g1536 503 Pfam Dof domain, zinc finger 159 216 IPR003851 GO:0003677|GO:0006355
Aed10g1536 503 MobiDBLite consensus disorder prediction 442 503 - -
Aed10g1536 503 MobiDBLite consensus disorder prediction 146 160 - -
Aed10g1536 503 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 38 503 - -
Aed10g1536 503 MobiDBLite consensus disorder prediction 83 111 - -
Aed10g1536 503 ProSiteProfiles Zinc finger Dof-type profile. 162 216 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g1536 Aed-Chr10 20198006 20201797 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g1536 85 501 C2C2-Dof Transcription Factor Family AT5G39660 39.450 1.18e-69 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Aed10g1536 zf-Dof 1e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1536 - - gmx:100813315 516.538