Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1159 ATGCAGGAAATACATTCCATAGGCGGTGGGAGGTTCTTCGGCGGCGGTGGCGCTGGCGGCGACCGGAGGCTAAGGCCGCACAGCCAGAGCCACCAGCAGCCGCCGCTAAAGTGCCCCCGCTGCGACTCACTCAGCACCAAGTTCTGTTACTACAACAACTACAACCTCTCACAGCCCCGCCACTTCTGCAAGAACTGCCGCCGCTACTGGACCAAAGGCGGCGTCCTCCGCAACGTCCCCGTCGGCGGAGGTTGCCGTAAATCAAAACGCTCCAGCAAGCCCAAAACCACCACCGCCAGCGACAATAACAACCCATCCTCTTTCTCGGAAACCGCTCCGGCCACCGCACCAACGCCGCCGCCACCGGAGCCGGAGCATAACTCCAACTCTCACTCTAGCAGCGAAAGCTCCACTTTAACCGTCGCCGCCACGGAGGCGATGTCGGCGCCGACATCAAACACTTCTTCGAAGAACGATTTATTACTTGATAGCAACCGTGAATCGAAGATGATGAACCCTAACCATAACCATAACCCCTCCTTGGAGAGTGGTGGTATTTTCTCTGAGATAGGGAACTTCACCAGCCTCATCAATTCAAACAACGAAGCATTGGGCTTTGGGTTTGGAAACAATGATAATAGCAACAACAACAGCGTTCTCGATGCGACGTCGTTTCGGTTCGGTGTTAGTGTTACTCATGCGCACGGGAATGGTCAGTGGCAGCAGAATCATCAGGAGTATGGTACGGCGTCGTTTCTCGACCAAACTATGCCGTTTGAGTTTTCTTCGCTGCAGCAGCAGCAGCATGGAGGGTTTGGATCGTTGGATCAAGGGAACATTGTGGGGGCAGAAGTCACATCGGCGATGATGACTCCACGTGGCGGTAGTGATGAGGAGGGGTCTAAAATGGTGAGTGGGACACGTAGGCATGAGTGTGAGGGGTTGGGACTTGGGTGTGGACTGACAGAGGAGGCATCTGATTCTACTGCAATGCAAGTGCCAAGTGTGATGGCTAAGCAAACGTTACCTCAACATCACGTTTTTATTTTTTTATTTTCCTGA 1062 0.5377 MQEIHSIGGGRFFGGGGAGGDRRLRPHSQSHQQPPLKCPRCDSLSTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKSKRSSKPKTTTASDNNNPSSFSETAPATAPTPPPPEPEHNSNSHSSSESSTLTVAATEAMSAPTSNTSSKNDLLLDSNRESKMMNPNHNHNPSLESGGIFSEIGNFTSLINSNNEALGFGFGNNDNSNNNSVLDATSFRFGVSVTHAHGNGQWQQNHQEYGTASFLDQTMPFEFSSLQQQQHGGFGSLDQGNIVGAEVTSAMMTPRGGSDEEGSKMVSGTRRHECEGLGLGCGLTEEASDSTAMQVPSVMAKQTLPQHHVFIFLFS 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1159 353 MobiDBLite consensus disorder prediction 80 160 - -
Aed10g1159 353 PANTHER DOF ZINC FINGER PROTEIN 4 16 247 - -
Aed10g1159 353 MobiDBLite consensus disorder prediction 95 113 - -
Aed10g1159 353 ProSitePatterns Zinc finger Dof-type signature. 38 74 IPR003851 GO:0003677|GO:0006355
Aed10g1159 353 ProSiteProfiles Zinc finger Dof-type profile. 36 90 IPR003851 GO:0003677|GO:0006355
Aed10g1159 353 MobiDBLite consensus disorder prediction 1 38 - -
Aed10g1159 353 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 16 247 IPR045174 GO:0003700|GO:0006355
Aed10g1159 353 MobiDBLite consensus disorder prediction 127 160 - -
Aed10g1159 353 Pfam Dof domain, zinc finger 35 90 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g1159 Aed-Chr10 10876135 10877695 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g1159 21 107 C2C2-Dof Transcription Factor Family AT5G60850 68.889 1.08e-38 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Aed10g1159 zf-Dof 3.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1159 - - gmx:100818266 319.316