Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0939 ATGGGTTTATCTTCTATGCACGTCTGCATGGATTCATCAGATCATTGGTTGCAGGGAACAATTCACGAGGATCAGTCTGGAATGGATTCATCTTCATCACCCTCTGGGGACATGCTAACATGCTCAAGGCCCATGATAGAGAGAAGGCTAAGACCCCCACATGACCAAGCCCTAAAGTGCCCAAGGTGTGACTCAACCCACACCAAGTTCTGCTACTACAACAACTACAGTCTCTCTCAGCCAAGGTACTTCTGCAAGACCTGCAGAAGGTACTGGACCAAAGGTGGCACTCTCAGGAACATTCCTGTTGGTGGTGGCTGCAGAAAGAACAAAAAAGTCTCTTCCAAAAAACCCAACAATGACCACCAATTACTCAACACCCAAACACAGCCCCCCCCACATGCACCCTCCTCCTCTTCCTACCACCACCACAAAGACCTTCAACTCTCTTTCCCTGATGTGCAGTTTTCCCACCTCAGCAACTTTCTTGGGACTAACAACAACAATGCAGGAGGTGGAAACCCTAGTTTCATGGAGGGCAAATATGGAATTGGGGGCATGATTGAGAACCCTAGGCCAATTGACTTCATGATGGAGAGCAAGCTGGAGGGCATAATTGGAAGCAGTGGCTCCAGGAATTTTGATTTTTTTGGAAATAGTACTCATGACATGGGTATGGGAGGAGCTGGTGATATGAACGGTGCTACTACTACTTCACATTTTCATCATCATCATGGTCTTTCAGCATTTGGTGGCATGTCTATGTTGTCCCTTGATCATGGCAACAACAACAACAACAATGGTGCTAGTAACTACTTAATGGACTCTTGCCAGCGTTTGATGCTTCCATATGATCATGCAAGTAATGAGGACCATCATAATATTGTCCCAATTGATGTGAAGCCAAACCCTAAACAGTTGTTGTCCCTTGAATGGCAGCAAGACCAGCAGGGTTGCTCTGATGCCGGAAAAGACTCATTTGGGTATCTCAACGGTCCAGGATCATGGACTGGCATGATGAACGGCTATGGTTCTTCCACCACAAACCCTTTGGTCTAA 1059 0.4655 MGLSSMHVCMDSSDHWLQGTIHEDQSGMDSSSSPSGDMLTCSRPMIERRLRPPHDQALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVSSKKPNNDHQLLNTQTQPPPHAPSSSSYHHHKDLQLSFPDVQFSHLSNFLGTNNNNAGGGNPSFMEGKYGIGGMIENPRPIDFMMESKLEGIIGSSGSRNFDFFGNSTHDMGMGGAGDMNGATTTSHFHHHHGLSAFGGMSMLSLDHGNNNNNNGASNYLMDSCQRLMLPYDHASNEDHHNIVPIDVKPNPKQLLSLEWQQDQQGCSDAGKDSFGYLNGPGSWTGMMNGYGSSTTNPLV 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0939 352 MobiDBLite consensus disorder prediction 119 143 - -
Aed10g0939 352 ProSiteProfiles Zinc finger Dof-type profile. 58 112 IPR003851 GO:0003677|GO:0006355
Aed10g0939 352 MobiDBLite consensus disorder prediction 103 143 - -
Aed10g0939 352 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 18 346 IPR045174 GO:0003700|GO:0006355
Aed10g0939 352 ProSitePatterns Zinc finger Dof-type signature. 60 96 IPR003851 GO:0003677|GO:0006355
Aed10g0939 352 Pfam Dof domain, zinc finger 55 112 IPR003851 GO:0003677|GO:0006355
Aed10g0939 352 PANTHER - 18 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0939 Aed-Chr10 7970919 7973191 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0939 1 352 C2C2-Dof Transcription Factor Family AT5G62940 42.602 3.87e-60 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Aed10g0939 zf-Dof 1.9e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0939 - - gmx:100806697 508.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1456 6 18872913 18875707 Aed10g0939 10 7970919 7973191 PCT