Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0466 ATGGACACAGCTCAGTGGGCACAGGGTAATAACATTGGAGTGGTTAAACCACCACCACAACCTATGGAAGGTTCAAAGCCTTCTCCTTCTATGTTGGAGAGAAGGGCAAGGCCTCAAAAGGACCAAGCTTTGAACTGTCCAAGATGCAATTCAACCAACACCAAATTCTGCTACTACAATAACTATAGCCTCTCTCAGCCAAGGTACTTTTGCAAGACATGTAGAAGGTATTGGACTGAGGGTGGTTCTCTGAGAAATGTTCCTGTTGGTGGTGGCTCTAGAAAGAACAAGAGATCAACCCCACCAACAGCACCATCATCAGCAGCATCAGCATCAACAAAGAAGCTTTCTGATCTCACAACTCCAAATTTCCCTCAATCTGCTTCTCAGGAGCCTAAGATCCACCAAGGGCAGGACCTTAACTTAGCATATCCACCAGCTGATCAGGACTACAGCACTGTGTCAAAGTTCATGGAGATTCCTTACAGCAACACTGATTTACATCATCATCAAAACCCTACTAATTCCTCATCAATATCTGCATCTACTTCTCAGTTGTCTGCCATGGAGCTTCTCAAAACTGGTATTAATGCTTCCTCAAGGGGTGTTTTGAACAACTCCTTCATGCCAATGTACAATTCAACTGGGTTTCCCAACTTGCAAGACTTTAAGCCATCACCAGTAGTACCTGGCCTTAACTTCAGTCTTGAGGGGTTTGAAAATGGCTATGGGGGTCTCCAGGGAATTCAAGAGGGTACTGGTCCTACTGGTGCAAGGATCTTGTTTCCTGTGGTGGAGGATTTGAAACAGCAGCAGCAGGTTCCAAGTACCAATGAGTTTCATCATCAGCAGAATAGAAGTCAAGGGGATTCTACTGGCTATTGGAATGGCATGTTAGGTGGAGGATCATGGTAG 915 0.4514 MDTAQWAQGNNIGVVKPPPQPMEGSKPSPSMLERRARPQKDQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSTPPTAPSSAASASTKKLSDLTTPNFPQSASQEPKIHQGQDLNLAYPPADQDYSTVSKFMEIPYSNTDLHHHQNPTNSSSISASTSQLSAMELLKTGINASSRGVLNNSFMPMYNSTGFPNLQDFKPSPVVPGLNFSLEGFENGYGGLQGIQEGTGPTGARILFPVVEDLKQQQQVPSTNEFHHQQNRSQGDSTGYWNGMLGGGSW 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0466 304 ProSiteProfiles Zinc finger Dof-type profile. 44 98 IPR003851 GO:0003677|GO:0006355
Aed10g0466 304 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 1 301 IPR045174 GO:0003700|GO:0006355
Aed10g0466 304 ProSitePatterns Zinc finger Dof-type signature. 46 82 IPR003851 GO:0003677|GO:0006355
Aed10g0466 304 PANTHER DOF ZINC FINGER PROTEIN DOF4.6-LIKE 1 301 - -
Aed10g0466 304 Pfam Dof domain, zinc finger 41 98 IPR003851 GO:0003677|GO:0006355
Aed10g0466 304 MobiDBLite consensus disorder prediction 275 294 - -
Aed10g0466 304 MobiDBLite consensus disorder prediction 82 143 - -
Aed10g0466 304 MobiDBLite consensus disorder prediction 275 295 - -
Aed10g0466 304 MobiDBLite consensus disorder prediction 96 136 - -
Aed10g0466 304 MobiDBLite consensus disorder prediction 1 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0466 Aed-Chr10 3852364 3854781 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0466 30 304 C2C2-Dof Transcription Factor Family AT3G61850 45.085 1.03e-54 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Aed10g0466 zf-Dof 1.3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0466 - - gmx:778114 432.95