Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0293 ATGCAACACACCTGTCTCCTACTCAAACTCCAAACTCCCCCTTTCACTTTTGCAAGTGAAACTTTCCCCCTCCCCAACACTCCCAGAAGGAGAACGAACTCAGAAAACCCTAAACTAAACCCCTCAAACGACGTTGTTGTAGATTCCGACATCCCAGAATTAGTAACCTTCACCACATTAATGCCAAATCCAAAGCACGTTCAGCAGAGCATTCTCCTACTCTCGCTACTTCTCCAAGCGGCGTCAAAATCCACGATCGAGCCATGCTCGAACTCAGACTCATGCAACGCGCTCCTAGGTTACACGCTCTACACGGACCTCAAAGTCTCGGAAGTAGCGTCACTGTTCCAAATCGACCCCATCGCGCTCCTCACGGCTAACGCCATCGACATCTCCTACCCCGACGTGGAGCACCACATCCTCCCCTCGAAGCTCTTCCTCAGAATCCCCATCTCCTGCGCCTGCGTCGACGGCATTCGCAAATCCGTCGCTACCCACTACAAGACCCGCCCTTCCGACACCCTCTCCTCCATCGCCGACTCCGTCTACGGCGCCCTCGTCTCCTCCGACCAGCTCCGCGAGGCCAACTCCATCTCCGACCCCTCCGTCCTCGATGTGGGACAGACCCTCGTCGTTCCTCTCCCCTGCACCTGCTTCAACGGCTCCGATAACTCTCTCCCCGCGATTTATCTCTCTTATGTTGTTCGCCCCGTTGATACCCTCGCTGCTATTGCTGCTAGGTACTTCACCACTCTCACTGATTTGATGAATGTTAATGCCATGGGAACCACTGCTATTAACGACGGCGATATCATTGCTGTTCCAATACCTGCTTGTGCTTCGAATTTTCCGAAATCCGCCTCTGATTTCGGCTTGCTTGTTCCCAATGGAAGCTATGCCATTACCGCGGGGCACTGCGTGCAGTGTAGCTGTGGACCGAACAACCTTGATTTGTACTGTATGCCGGCTTCTCTGGCTGTTTCTTGCTCCAGCATGCAATGTAGAGGCAGCAACCTTATGCTTGGGAATGTTACCGTGCAGCAGACTAGTGGTGGTTGCAATGTTACTTCTTGCAATTATGATGGCATTGTTAATGGCAGCATTGTAACAACGTTGTCCCCGTCTCTTCAGCCTCGATGTCCAGGGCCACAGGAATTCCCTCCCCTCGTTGCCCCACCTACATCTGTTGCAAGGGACATCGTGTTTGCACCAGCACCATCGCCCCTGTTCAATGGAGCCGGTCCATTATCACCCAAATCCTCACTGGTGCCTTCAACGGCAGGGCTTCCAGGATTCTCTCCTGCAAATGGACCTATTAGCGGCATTTCTTCAGGTGCTTCTTCTGCCGCATGCTCCTTGGTGAAACCATTGCCCACTTTGACGTATGCACTATTGTTGTTATTGTTTGTAAAGTTGATGATACCTGTGGCATTGTAA 1437 0.5233 MQHTCLLLKLQTPPFTFASETFPLPNTPRRRTNSENPKLNPSNDVVVDSDIPELVTFTTLMPNPKHVQQSILLLSLLLQAASKSTIEPCSNSDSCNALLGYTLYTDLKVSEVASLFQIDPIALLTANAIDISYPDVEHHILPSKLFLRIPISCACVDGIRKSVATHYKTRPSDTLSSIADSVYGALVSSDQLREANSISDPSVLDVGQTLVVPLPCTCFNGSDNSLPAIYLSYVVRPVDTLAAIAARYFTTLTDLMNVNAMGTTAINDGDIIAVPIPACASNFPKSASDFGLLVPNGSYAITAGHCVQCSCGPNNLDLYCMPASLAVSCSSMQCRGSNLMLGNVTVQQTSGGCNVTSCNYDGIVNGSIVTTLSPSLQPRCPGPQEFPPLVAPPTSVARDIVFAPAPSPLFNGAGPLSPKSSLVPSTAGLPGFSPANGPISGISSGASSAACSLVKPLPTLTYALLLLLFVKLMIPVAL 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0293 478 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 3 69 431 - -
Aed10g0293 478 SUPERFAMILY LysM domain 231 276 IPR036779 -
Aed10g0293 478 SMART LysM_2 166 213 IPR018392 -
Aed10g0293 478 SMART LysM_2 232 275 IPR018392 -
Aed10g0293 478 CDD LysM 165 212 IPR018392 -
Aed10g0293 478 Gene3D LysM domain 221 286 IPR036779 -
Aed10g0293 478 Gene3D LysM domain 159 219 IPR036779 -
Aed10g0293 478 ProSiteProfiles LysM domain profile. 231 274 IPR018392 -
Aed10g0293 478 MobiDBLite consensus disorder prediction 21 43 - -
Aed10g0293 478 CDD LysM 232 274 IPR018392 -
Aed10g0293 478 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 69 431 - -
Aed10g0293 478 Pfam LysM domain 233 274 IPR018392 -
Aed10g0293 478 Pfam LysM domain 167 213 IPR018392 -
Aed10g0293 478 SUPERFAMILY LysM domain 165 214 IPR036779 -
Aed10g0293 478 ProSiteProfiles LysM domain profile. 165 212 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0293 Aed-Chr10 2382491 2385306 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0293 71 449 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 71.129 0.0 562
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0293 - - gmx:100808966 720.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0293 10 2382491 2385306 Aed10g0293 10 2382491 2385306 ECH