Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu09g02759 ATGAAGGTTTTTGTAAAGACTCTGAAGGGCACGCACTTCGAAATTGAAGTGAAGCCCGATGACACGGTTACCGAAGTGAAGAAAAATATAGAAACTGTTCAAGGTGCAAATGTCTACCCTGCTGCACAGCAAATGCTTATTCATCAAGGCAAGGTTCTTAAGGATGGTACTACTTTGGAGGAAAACAAAGTAGCTGAAAACAGTTTCATTGTAATCATGCTTTCTAAGAGTAAGAGCACATCTGGTGAAGGATCTACTGCATCAACAGCACCTTCATCAAAGGCTCCACAGACTAGTGCAACTCCTACTCCTACCCCATCTGTGTCAGTAGCACCTCAAGCTGTTCCTGCCACTGCTGCACCGCCTGCGCCTTCGCCTTCACCTTCGCCTGCACCTGCTGCACCTGCTGCACCTGCACCTGCACCTGCACCTGCACCTTCACCTGCTGCAGCTCCTACATCTACAGATACTGCTGTGGTAGGGTCTGATATCTATGGGCAGGCAGCATCCAATCTGGTTGCCGGAAGCAACTTGGAAGGAACAATTCAGCAAATTCTTGATATGGGGGGTGGGAGCTGGGATAGGGACACAGTTATCCGTGCTCTTAGAGCTGCTTATAACAACCCTGAGAGAGCTGTTGAATATTTGTATACGGGTATCCCTGAGCAAGCTGAAGCTCCACCTGTGGCCCGAGTGCCTACAAGTGTACAACCTGCAAATCCACCAGCTGCTGCACCTCAGGCAGCTTCACCTCAAGCAGCACAACCAGCTCCTGTCACAACTAGTGGACCAAATGCTAATCCTCTAGACCTATTTCCCCAGGGTCTCCCCAATGTTGGTTCTGGTGCTGCTGGCGCCGGCTCTTTAGAATTTCTGCGCAACAGCCAACAGTTCCAAGCCTTGCGAGCTATGGTGCAGGCTAACCCACAAATATTGCAGCCTATGCTACAAGAGCTTGGCAAACAAAATCCTCATCTTATGAGATTGATTCGAGATCATCAAGCTGATTTCCTTCGACTGATAAATGAACCTGTGGAAGGTGGTGAGGGGAATTTATTTGGCCAGCTAGCTGCTGGCATGCCACAATCAGTAACTGTTACACCTGAAGAGCGCCAAGCAATTGAACGTCTTGAAGCAATGGGCTTTGATCGTGCACTTGTGTTGGAGGTGTATTTTGCTTGCAACAAGAACGAGGAATTGGCTGCCAACTACCTCTTAGATCACATGCACGAGTTTGACGAACAATAG 1248 0.4864 MKVFVKTLKGTHFEIEVKPDDTVTEVKKNIETVQGANVYPAAQQMLIHQGKVLKDGTTLEENKVAENSFIVIMLSKSKSTSGEGSTASTAPSSKAPQTSATPTPTPSVSVAPQAVPATAAPPAPSPSPSPAPAAPAAPAPAPAPAPSPAAAPTSTDTAVVGSDIYGQAASNLVAGSNLEGTIQQILDMGGGSWDRDTVIRALRAAYNNPERAVEYLYTGIPEQAEAPPVARVPTSVQPANPPAAAPQAASPQAAQPAPVTTSGPNANPLDLFPQGLPNVGSGAAGAGSLEFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIRDHQADFLRLINEPVEGGEGNLFGQLAAGMPQSVTVTPEERQAIERLEAMGFDRALVLEVYFACNKNEELAANYLLDHMHEFDEQ 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu09g02759 415 Gene3D - 280 345 IPR036353 GO:0003684|GO:0006289|GO:0043161
Adu09g02759 415 Gene3D - 362 409 - -
Adu09g02759 415 SMART CBM 287 330 IPR006636 -
Adu09g02759 415 Pfam UBA/TS-N domain 370 405 IPR015940 -
Adu09g02759 415 Pfam UBA/TS-N domain 181 216 IPR015940 -
Adu09g02759 415 Gene3D - 1 80 - -
Adu09g02759 415 MobiDBLite consensus disorder prediction 232 264 - -
Adu09g02759 415 MobiDBLite consensus disorder prediction 77 156 - -
Adu09g02759 415 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 414 - -
Adu09g02759 415 SUPERFAMILY XPC-binding domain 286 351 IPR036353 GO:0003684|GO:0006289|GO:0043161
Adu09g02759 415 TIGRFAM rad23: UV excision repair protein Rad23 1 413 IPR004806 GO:0006289
Adu09g02759 415 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 176 219 IPR015940 -
Adu09g02759 415 Pfam XPC-binding domain 289 344 IPR015360 GO:0003684|GO:0006289|GO:0043161
Adu09g02759 415 PRINTS DNA repair protein Rad23 signature 315 337 IPR004806 GO:0006289
Adu09g02759 415 PRINTS DNA repair protein Rad23 signature 364 380 IPR004806 GO:0006289
Adu09g02759 415 PRINTS DNA repair protein Rad23 signature 381 395 IPR004806 GO:0006289
Adu09g02759 415 PRINTS DNA repair protein Rad23 signature 396 411 IPR004806 GO:0006289
Adu09g02759 415 SUPERFAMILY UBA-like 349 413 IPR009060 GO:0005515
Adu09g02759 415 SMART uba_6 370 407 IPR015940 -
Adu09g02759 415 SMART uba_6 178 218 IPR015940 -
Adu09g02759 415 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Adu09g02759 415 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 367 408 IPR015940 -
Adu09g02759 415 SMART ubq_7 1 75 IPR000626 GO:0005515
Adu09g02759 415 MobiDBLite consensus disorder prediction 117 149 - -
Adu09g02759 415 SUPERFAMILY Ubiquitin-like 1 80 IPR029071 -
Adu09g02759 415 PANTHER UV EXCISION REPAIR PROTEIN RAD23-RELATED 1 414 - -
Adu09g02759 415 SUPERFAMILY UBA-like 175 227 IPR009060 GO:0005515
Adu09g02759 415 Gene3D - 171 221 - -
Adu09g02759 415 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Adu09g02759 415 MobiDBLite consensus disorder prediction 77 112 - -
Adu09g02759 415 CDD UBA1_Rad23_plant 172 221 - -
Adu09g02759 415 CDD UBA2_RAD23_plant 366 408 - -
Adu09g02759 415 CDD Ubl_Rad23 1 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu09g02759 Adu-Chr9 115319777 115324222 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu09g02759 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 39.189 3.26e-09 53.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu09g02759 09 115319777 115324222 Adu09g02759 09 115319777 115324222 ECH