Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu09g02696 ATGGGTTGCCCTTCTGCTAAAGACTTTGCGATGCTATGGTGTTTTGGCTTGAATGAGATGGAAAACATCACCTGTGAGGATTTGTTTGGATCTGCTTCATGTGTTTCCGCTGATTCAAATATGGCACAAGCCTCTGTACGGGCTAGAAGTCGAATATCATCTAAGGCCAAACTTCATGGGGGATCGAGCAGTCGACAAGGTCAGATATTATACAGTGATCAAGAGCGAAAAAAGATTCTGCAGCAGATTATTGATTTAAAACAGCTTCAGCTAAATGAGAATACTGGTCAAACAATAAAGATAAATGGACCTGAAGAAGAAACAGACTTAACTTCTTCAGCATATCAAACTATCAAGAAATCAGATGAAAAGTTCAATAAGCAAGAACAAAATTCAAAGGATGTTGTGGAAAAAGACAGTCACACAGTGGAGCTGAATCCTGAACCTTTGCCTTCTACGTTTTCTCAGCTTGATAACTTACCTTCAATTGTAGATCTTCCCTTACATGGAGAGTTGTTCTGGACAGGGAAAAGTCCACCCCGAAGTAATCAGTTGTGGTCCCAAAACATACAAGACCTTGGGATATGTGAAGAACTTGTTTGTCGAGATGATTTCAACATACCTGACGTTGATCTAACATTCCAAAACTTTGAGGAACTATTTGGAGATCAAGATCCAGTTAGAGCACTGCTTGATGATAATGATGTTTCCTGCTCCTCTTTAGAGAAGGATATGTCAATTGATAAGTCAGATATTGACAATCTAAGTGCAATAGAGGATTCTTCGGCAGCCATATCAATTACCATCTTGCAATCAGCTCGTGAGAACAAGGATATCGATAGTACCAACATCCAGCATTATCCAAGAAGCACAGATCCTCCACACACAATTCGACCATTCGAGTCAACTGTGTCATCGTCTGTTTCAAGATTCTGGGCTGCAAGCAGTCCTACTTATCACAATGACGGTGCCCTTTCTCCCTGCAGTGAAGAGAAAGGCTATTTAGGAAATTCAGCTGAATTGGAGATATCACATATGGAGGCCACACAAAATCTCACTCTCACGTATGAAGAGAAGCCATCTCGACGGAACGAGAAGCAAGTTCGACTCCCATCTGGGAAACCTCACCAACTGATTCTTTCATTTTCATCATACACATACTTTTATATATTTCTAACAATGTGTCGGAGACGGTTTTTTTCCCTCGCACCAAACACACTACCCCTCTCTCACTCATCGCCACTATATAAACCCTTCTTCCACCTTTCTCTCTCTCTCAAGAAGCTCAGAACCAGACGACGACGTCAGCATAAATCTTGCATCGAGGAGAGAAAAAAAATGCATAACAAGGAAGCTTGCTCTCCCTCCTCCAATGGCGGATTTGGCGCCAACACCGCTACTGGCGGTGGTCAAATCCAGTCCAATGGCGGCGCATTGGCTTCGTTCTACTCTGCTCTCTTGAACGACAATCCGTCGCTCTCGGCGAATAGCAGCAGCTCGCTTTACCCGTACTCTGAGTCGGGAACTCAGATCAACTCGTACGACTCTTGCGTCATACAGAAGCACCAGGACATGGTGAATCGTCACAGCATGTGCCTTAATCGCCTCGTGGAGACTTCCAAGGAGGTAGAATCTCTGCGGCAAGAGAACGCGCATCTCCGTGCGGTGAACAAGGAGCTCCAGAAGCAGCTCAACTTCGTCATCCAGGCTTCGCTGGAGAACCAATTCGGTGGCGGCTCCTCCTGCCAGGGTCAAACGACGCCGTTCGACGTGGTGCATGGATTCCGCGGGTTTCAGATTGGGGAAGGAAAAGAGAATTGCGGTGATTGGAATAGTAACAACACCAACAATAATAGCAATAACAATAAGGAGCAGGAAGTTTCGGACGAGAGTCCAACGAGCGTGATTGAGAACAACGGCGTTGAGGTTGAGAGGTTCTCTCTCCCAAAGAGCATATCTGTGAGGTCCAATGGTTACCTGAAGATGGCTCAGTCTGCTGCTGCGGCTACTGCCACCAACACCACTACCTGTCGCACTAAGCCTACGACTCGCCCACGCGTCTCCTCCACTCCACCTGATGCCGTTCAAAAGGTATATGTGCGTGGAGGGAAGACAGAGGAAGAGCCTCTTGAGATGGTGGTTTATAACCAAGGGATGTTCAAGACTGAGCTGTGCAATAAATGGCAGGAAACAGGGACATGCCCATATGGAGACCACTGCCAATTTGCTCACGGCATAGGGGAGCTTCGCCCAGTGATCCGCCACCCCCGCTACAAAACTGAGGTCTGCAGGATGGTCCTTGCTGGTGTTGTATGTCCATATGGCCATAGATGCCATTTCCGCCACGCACTCACTGAACAAGAGAAAGCTATATCACATCCTAAGCCCAGAACAATCAAGCTCGAAAGATAG 2412 0.4631 MGCPSAKDFAMLWCFGLNEMENITCEDLFGSASCVSADSNMAQASVRARSRISSKAKLHGGSSSRQGQILYSDQERKKILQQIIDLKQLQLNENTGQTIKINGPEEETDLTSSAYQTIKKSDEKFNKQEQNSKDVVEKDSHTVELNPEPLPSTFSQLDNLPSIVDLPLHGELFWTGKSPPRSNQLWSQNIQDLGICEELVCRDDFNIPDVDLTFQNFEELFGDQDPVRALLDDNDVSCSSLEKDMSIDKSDIDNLSAIEDSSAAISITILQSARENKDIDSTNIQHYPRSTDPPHTIRPFESTVSSSVSRFWAASSPTYHNDGALSPCSEEKGYLGNSAELEISHMEATQNLTLTYEEKPSRRNEKQVRLPSGKPHQLILSFSSYTYFYIFLTMCRRRFFSLAPNTLPLSHSSPLYKPFFHLSLSLKKLRTRRRRQHKSCIEERKKMHNKEACSPSSNGGFGANTATGGGQIQSNGGALASFYSALLNDNPSLSANSSSSLYPYSESGTQINSYDSCVIQKHQDMVNRHSMCLNRLVETSKEVESLRQENAHLRAVNKELQKQLNFVIQASLENQFGGGSSCQGQTTPFDVVHGFRGFQIGEGKENCGDWNSNNTNNNSNNNKEQEVSDESPTSVIENNGVEVERFSLPKSISVRSNGYLKMAQSAAAATATNTTTCRTKPTTRPRVSSTPPDAVQKVYVRGGKTEEEPLEMVVYNQGMFKTELCNKWQETGTCPYGDHCQFAHGIGELRPVIRHPRYKTEVCRMVLAGVVCPYGHRCHFRHALTEQEKAISHPKPRTIKLER 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu09g02696 803 MobiDBLite consensus disorder prediction 672 691 - -
Adu09g02696 803 SUPERFAMILY CCCH zinc finger 753 787 IPR036855 GO:0046872
Adu09g02696 803 PANTHER CCCH ZINC FINGER/TIS11-RELATED 485 796 IPR045877 GO:0003729
Adu09g02696 803 Coils Coil 536 563 - -
Adu09g02696 803 SUPERFAMILY CCCH zinc finger 716 751 IPR036855 GO:0046872
Adu09g02696 803 MobiDBLite consensus disorder prediction 122 142 - -
Adu09g02696 803 MobiDBLite consensus disorder prediction 606 633 - -
Adu09g02696 803 ProSiteProfiles Zinc finger C3H1-type profile. 757 785 IPR000571 GO:0046872
Adu09g02696 803 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 720 745 IPR000571 GO:0046872
Adu09g02696 803 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 15 485 796 - -
Adu09g02696 803 MobiDBLite consensus disorder prediction 672 690 - -
Adu09g02696 803 SMART c3hfinal6 719 746 IPR000571 GO:0046872
Adu09g02696 803 SMART c3hfinal6 757 784 IPR000571 GO:0046872
Adu09g02696 803 Gene3D - 714 752 - -
Adu09g02696 803 Gene3D - 753 789 - -
Adu09g02696 803 ProSiteProfiles Zinc finger C3H1-type profile. 719 747 IPR000571 GO:0046872
Adu09g02696 803 MobiDBLite consensus disorder prediction 438 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu09g02696 Adu-Chr9 114488681 114498289 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu09g02696 518 792 C3H Transcription Factor Family AT1G68200 51.429 1.47e-79 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Adu09g02696 zf-CCCH 7.6e-12 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu09g02696 09 114488681 114498289 Adu09g02696 09 114488681 114498289 ECH