Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g00342 ATGCAATCCAACGGCTCTGATTCGCAGCAACAGCAACCAACGGACCAGAATCAACGCCAACAGCAGACGCCACCGCACCCGCAGCCACTGCCACTCCCACAGCAGTGGGTGCCGATGCAGTATCCCGCCACCGCCATGGTAATGCAGCACCCCATGCTGCCGCCTCAACATTACGCGCCGCCGCCACCCCAGCCCTACATGCCCTACCACCAGTACCAGCAGCAGGTGCCGCACGTTACCCCCCACCACGCACATCAGCACCAGCCTCAAGGATCCACCGCCGAGAACAAGACGATCTGGGTCGGAGATTTGCATCATTGGATGGACGAGAATTATCTCCACCGCTGCTTCGCTTCCACCGGCGAGATTTCCTCCATCAAGGTTATTCGCAATAAGCAGACTGGTCTATCAGAGGGTTATGGATTTGTGGAATTCTATTCACACGGCACAGCTGAAAAAGTTTTACAGAACTATGCTGGAATTTTGATGCCAAACACAGAGCAACCTTTCCGGCTGAACTGGGCAACATTTAGCACAGGAGACAAGCGTTCAGACAATGTTCCAGACCTTTCAATTTTTGTAGGAGATTTAGCTGCAGATGTTACAGATAGCCTCTTGCATGAGACTTTCTCCAGTAGATACCCTTCTGTTAAGGCTGCAAAAGTTGTTTTTGATGCCAACACTGGCCGCTCCAAGGGATATGGTTTTGTCAGGTTTGGTGATGATAATGAGAGGTCTCAAGCTATGACTGAAATGAATGGTGTGTACTGTTCTAGCAGGCCTATGCGTATTGGAGCTGCAACTCCTAGGAAATCATCTGCTTATCAACAAGGAGGTCAATCAAATGGCACATCCAGCCAATCTGAAGCTGATTCTAATAACACAACTATATTTGTTGGAGGACTGGACCCTAATGTTACAGCTGAAGATCTTAAGCATCCATTCTCCCAGTATGGCGAGATTGTCTCTGTTAAGATACCTGTTGGAAAAGGTTGTGGTTTTGTACAATTTGCAAACAGAAATAATGCTGAAGAGGCCTTGCAGAAGCTAAATGGGACAATGATTGGCAAGCAAACAGTTCGCCTTTCTTGGGGCCGAAATCCAGCAAATAAGCAGTTTAGAATGGAGTTTGGGAATCCATGGAGTGGGGCATATTATGGGGGCCCTGTTTATGATGGTTATGGATATGCATTGCCACCTCCACATGACCCAAGCATTTATGCTGCTGCTTATGGTGCATATCCCGTTTATGGAGGCCACCAACAGCAAGTAAGCTGA 1278 0.4851 MQSNGSDSQQQQPTDQNQRQQQTPPHPQPLPLPQQWVPMQYPATAMVMQHPMLPPQHYAPPPPQPYMPYHQYQQQVPHVTPHHAHQHQPQGSTAENKTIWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHGTAEKVLQNYAGILMPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAADVTDSLLHETFSSRYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKSSAYQQGGQSNGTSSQSEADSNNTTIFVGGLDPNVTAEDLKHPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTMIGKQTVRLSWGRNPANKQFRMEFGNPWSGAYYGGPVYDGYGYALPPPHDPSIYAAAYGAYPVYGGHQQQVS 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g00342 425 MobiDBLite consensus disorder prediction 1 35 - -
Adu08g00342 425 Gene3D - 284 397 IPR012677 -
Adu08g00342 425 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 29 424 - -
Adu08g00342 425 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 190 269 IPR000504 GO:0003723
Adu08g00342 425 CDD RRM3_NGR1_NAM8_like 294 365 - -
Adu08g00342 425 MobiDBLite consensus disorder prediction 270 298 - -
Adu08g00342 425 MobiDBLite consensus disorder prediction 1 23 - -
Adu08g00342 425 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 295 367 IPR000504 GO:0003723
Adu08g00342 425 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 97 177 IPR000504 GO:0003723
Adu08g00342 425 SMART rrm1_1 98 173 IPR000504 GO:0003723
Adu08g00342 425 SMART rrm1_1 296 363 IPR000504 GO:0003723
Adu08g00342 425 SMART rrm1_1 191 265 IPR000504 GO:0003723
Adu08g00342 425 MobiDBLite consensus disorder prediction 267 298 - -
Adu08g00342 425 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 192 261 IPR000504 GO:0003723
Adu08g00342 425 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 297 360 IPR000504 GO:0003723
Adu08g00342 425 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 99 166 IPR000504 GO:0003723
Adu08g00342 425 CDD RRM2_SECp43_like 189 268 - -
Adu08g00342 425 SUPERFAMILY RNA-binding domain, RBD 189 368 IPR035979 GO:0003676
Adu08g00342 425 CDD RRM1_SECp43_like 98 178 - -
Adu08g00342 425 Gene3D - 177 283 IPR012677 -
Adu08g00342 425 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47C-RELATED 29 424 - -
Adu08g00342 425 Gene3D - 96 176 IPR012677 -
Adu08g00342 425 SUPERFAMILY RNA-binding domain, RBD 58 179 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g00342 Adu-Chr8 6029607 6034111 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g00342 99 376 Eukaryotic Initiation Factors Gene Family AT4G34110 27.915 2.00e-30 122
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu08g00342 08 6029607 6034111 Adu08g00342 08 6029607 6034111 ECH
Adu06g03222 06 110522985 110527339 Adu08g00342 08 6029607 6034111 PCT