Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g00327 ATGACGACGACGACGACGACTTCAGCAACCACAACCACAGCCACCGCCACCGTCATAGTCCCTTCTTCTTCTCCTTCTCCTTCTCATATGGATTCTTCTAACTATAACAAGCCATCTTCTTCTACTTTTTATTTTTCTTGTTCAACTGTCTCTTCAGCTGCCGCTGACAGCAAGGGGCAGTCGATTCAGCAGCGGAGGCTTACGAGGCAGAGGAGACTCCGCGACCATGACGCTGCCACCGACACCTATTCCTTGCCGGCTTCTCCTCTCCCTTCTTTCAAGTCCTTCGACTCGCCTTCCATGCCTCTCCCCCTGCCACGTCCTGACTCCCCGTTGACCCGCCGTCCCGAGTCAACTAGTCCCAATTCCGGTCATCCTTTCTTTGCCACTCCGCGTACCAGAAAGAGTGCGGATCATGATGCAGCTAAAAATGTAAGATCTCCAAGCAATTTGCGCAGAGCATCTTTTGATCCGACGATCCAGAGTGCAAGATATGATTTAACGGTCAATATACCATCTACAACGGTGCTATCTGGCAATATTGCATACAAAGATCCCCAAGAACACTCTCATGAGAGTTACTCTGAGACTATTTCTGAGTTGAAACTGCATTATGCTGCCAAGAGTGCCCCAACAAGCGTACTATCCAGTCCTGTTACAAGTCCGCGTAGATCCAGCAACTTAGATTTCTATGATCCTTCCCTACATTTGTTTCAAGATTTCAATGAAACTTTCAAAGTGTCACCGGCAAAAACACTTCACAGTCCAGACCTTTCTTCCCTTCGCAGCCGCAGTCCTTTCCACACTCCTAATAACATTCGAGAGGGATCTCAGCCTTATAATCTTTGCTCCAAAGAGCGGCCTGAAAGTAATGCACATCCATTACCCCTTCCGCCTAAATCTCCATCTCCATCACCGGCTCAATCAACTATCATGCATCAAACTTCTGAAATTTCACCCTCCATGAAGAAGGGTCAATGGCAGAAAGGGAAACTCATTGGCCGTGGATCATTTGGAAGTGTTTATCATGCTACCAACCTAGAAACGGGAGCATCGTGTGCAATGAAAGAGGTGGATCTGATTCATGATGATCCTAAGTCTGCTGATTCCTTAAAGCAACTAGAGCAGGAAATCAGAATTCTCCGTCAGCTACACCACCCTAACATTGTGCAGTATTATGGCAGTGAAATAGTTGGTGATCACTTGTACATATATATGGAGTATGTTCATCCTGGGTCAATTCATAAATTTATACATGAAAACTGTGGAGCTATGACTGAGTCTGTTGTTCGCAATTTCACTCGGCATATTCTCTCTGGATTGGCATACTTACATAATACAAAGACTATCCACAGGGATATCAAAGGTGCAAACTTGCTGGTTGATGCCTCGGGCATTGTCAAGCTTGCAGATTTTGGGGTGTCAAAAATTCTGACAGAGAAATCATATGAACTTTCATTGAAGGGAAGTCCCTACTGGATGGCTCCAGAGCTTATGATGGCTGCCATAAAGAAAGAATCAAATCCTGACATTGCCATGGCCATCGACATATGGAGCTTAGGGTGCACCATCATTGAAATGCTGACTGGCAGACCTCCTTGGAGCGAATTTGAAGGGCCTCAAGCAATGTTCAAGGTACTACACAGATCCCCACCTATACCAGAAACTCTATCCTCAGAGGGACAGGATTTCCTTAAGCAGTGTTTCAGAAGGAACCCTGCGGATCGACCAACAGCAGCAACCCTCCTTACACACGCCTTTGTACAAAATTTGCATGATCAAGATGTCCTAATTCATCCCCAACAACTCTATCATCCTAAAGGAGACCCGGGACCAAAAGAGAATACACGCAGACGCAATAGCCCAAAACACAATTCAAAATCTAGTCCCAGACACTCCATTGGCTCCAGGATTATTAACAAGATTCATAATATAATCGGAAGTTAA 1947 0.4556 MTTTTTTSATTTTATATVIVPSSSPSPSHMDSSNYNKPSSSTFYFSCSTVSSAAADSKGQSIQQRRLTRQRRLRDHDAATDTYSLPASPLPSFKSFDSPSMPLPLPRPDSPLTRRPESTSPNSGHPFFATPRTRKSADHDAAKNVRSPSNLRRASFDPTIQSARYDLTVNIPSTTVLSGNIAYKDPQEHSHESYSETISELKLHYAAKSAPTSVLSSPVTSPRRSSNLDFYDPSLHLFQDFNETFKVSPAKTLHSPDLSSLRSRSPFHTPNNIREGSQPYNLCSKERPESNAHPLPLPPKSPSPSPAQSTIMHQTSEISPSMKKGQWQKGKLIGRGSFGSVYHATNLETGASCAMKEVDLIHDDPKSADSLKQLEQEIRILRQLHHPNIVQYYGSEIVGDHLYIYMEYVHPGSIHKFIHENCGAMTESVVRNFTRHILSGLAYLHNTKTIHRDIKGANLLVDASGIVKLADFGVSKILTEKSYELSLKGSPYWMAPELMMAAIKKESNPDIAMAIDIWSLGCTIIEMLTGRPPWSEFEGPQAMFKVLHRSPPIPETLSSEGQDFLKQCFRRNPADRPTAATLLTHAFVQNLHDQDVLIHPQQLYHPKGDPGPKENTRRRNSPKHNSKSSPRHSIGSRIINKIHNIIGS 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g00327 648 Pfam Protein kinase domain 328 587 IPR000719 GO:0004672|GO:0005524|GO:0006468
Adu08g00327 648 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE YODA 46 630 - -
Adu08g00327 648 ProSitePatterns Protein kinases ATP-binding region signature. 333 356 IPR017441 GO:0005524
Adu08g00327 648 SUPERFAMILY Protein kinase-like (PK-like) 301 633 IPR011009 -
Adu08g00327 648 MobiDBLite consensus disorder prediction 113 129 - -
Adu08g00327 648 MobiDBLite consensus disorder prediction 52 149 - -
Adu08g00327 648 MobiDBLite consensus disorder prediction 132 146 - -
Adu08g00327 648 MobiDBLite consensus disorder prediction 52 66 - -
Adu08g00327 648 ProSiteProfiles Protein kinase domain profile. 327 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
Adu08g00327 648 MobiDBLite consensus disorder prediction 252 325 - -
Adu08g00327 648 MobiDBLite consensus disorder prediction 252 285 - -
Adu08g00327 648 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 46 630 - -
Adu08g00327 648 SMART serkin_6 327 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
Adu08g00327 648 MobiDBLite consensus disorder prediction 1 36 - -
Adu08g00327 648 Gene3D Transferase(Phosphotransferase) domain 1 323 626 - -
Adu08g00327 648 MobiDBLite consensus disorder prediction 306 323 - -
Adu08g00327 648 MobiDBLite consensus disorder prediction 602 640 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g00327 Adu-Chr8 5778958 5783494 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g00327 66 590 MAP Kinase Kinase Kinase AT5G66850 45.439 9.80e-148 442
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Adu08g00327 Pkinase 8.8e-68 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu08g00327 08 5778958 5783494 Adu08g00327 08 5778958 5783494 ECH
Adu06g03228 06 110588153 110594449 Adu08g00327 08 5778958 5783494 PCT