Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g00115 ATGGCTGGGTTCTTCTCTCTAGGTGGAAGGGGAGCTGGCCCACACAGCAACAAGGAAGAAGAAGGAGAAAGAGTAGCAGAAAAACATCATCAAGACCATCACAACAGCAATAGCCTATTCTTGTTCAGGAACAACGAGGAGGTGTACAACAAAGGAGGATTCGAGATATGGCCGCAGCCCTACCACCAAAACCAAGGTTTCAGCAACTACTACTCGTTTGGGGTGGGTCCTAGTACTCATCAACCTAGAAGGAACCACAACAACAACGACAACTCCAACAACAACTCCAACGACGAAGGCGTCTCCTTCTGTGTCTCGGATGAGTCGACGAGATTTGGACTGACGATGATGAGGTCCTCCGGTGGTGGTGGAGGCACGGGGAGCGGCGGCGGTGGCGGTGGCGTAAACTGCCAGGACTGCGGGAACCAAGCAAAGAAAGACTGTGCTCACCTGAGATGCAGGACTTGTTGTAAGAGCCGAGGGTTTCAGTGCCAAACCCACGTGAAGAGCACTTGGGTTCCTGCCGCAAAACGCCGTGAACGACAGCAACAACTCGCTGCCTTGCAGCAACAGCACTTGCACAGTGCAGACACTTCTTCTAAACGACACAGAGACACTCATCCAGCTCTTGACACTCTTCCTTGCGCTCCTCCTGTTCCCACCATCACCACCACAGGGTTGGAACTGGGTCAATTCCCTTCAGAAGTAAGCTCATCAGCGGTGTTTAGGTGTGTGAAAGTTAGCGCAATAGACAGTGTAGATGAACAGTATGCATATCAAACCGCTGTCAACATCGGAGGCCATGTTTTCAAGGGAATTCTCTACGATCAAGGTCCCCAAGGACTTTACACTACTGCCGTTGTTGCCGAGGGTTCTTCCGCTGGAGGAGGAGCTGAACCTCAACAACAACTCAGCCTCATAACAGCTGCAACCACCACCGCTGGGAACCCCTTTGACCCTTCTTCACTTTACCCGGCTCCCCTCAACGCTTTCATGGCTGGTACGCAATTCTTCCCACCACCAAAGTCCTAA 1032 0.5203 MAGFFSLGGRGAGPHSNKEEEGERVAEKHHQDHHNSNSLFLFRNNEEVYNKGGFEIWPQPYHQNQGFSNYYSFGVGPSTHQPRRNHNNNDNSNNNSNDEGVSFCVSDESTRFGLTMMRSSGGGGGTGSGGGGGGVNCQDCGNQAKKDCAHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLAALQQQHLHSADTSSKRHRDTHPALDTLPCAPPVPTITTTGLELGQFPSEVSSSAVFRCVKVSAIDSVDEQYAYQTAVNIGGHVFKGILYDQGPQGLYTTAVVAEGSSAGGGAEPQQQLSLITAATTTAGNPFDPSSLYPAPLNAFMAGTQFFPPPKS 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g00115 343 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 341 IPR007818 GO:0003700|GO:0006355
Adu08g00115 343 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 231 279 IPR006511 -
Adu08g00115 343 MobiDBLite consensus disorder prediction 72 101 - -
Adu08g00115 343 PANTHER PROTEIN SHI RELATED SEQUENCE 7 1 341 - -
Adu08g00115 343 Pfam Domain of unknown function (DUF702) 134 280 - -
Adu08g00115 343 MobiDBLite consensus disorder prediction 1 34 - -
Adu08g00115 343 MobiDBLite consensus disorder prediction 178 217 - -
Adu08g00115 343 MobiDBLite consensus disorder prediction 14 34 - -
Adu08g00115 343 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 136 178 IPR006510 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g00115 Adu-Chr8 1565795 1568290 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Adu08g00115 DUF702 3.2e-64 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu08g00115 08 1565795 1568290 Adu05g00866 05 10761510 10764001 ECH
Adu08g00115 08 1565795 1568290 Adu03g00524 03 4885964 4887130 ECH
Adu08g00115 08 1565795 1568290 Adu08g00115 08 1565795 1568290 ECH
Adu06g01243 06 16793252 16794403 Adu08g00115 08 1565795 1568290 PCT