Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g00108 ATGCTGAAATCGGGGACGATGGGAATGGAGGAGAGGAAACAGGCGAAGAAACCAGCACAAGCCAGCTCCAGAAAGGGTTGTATGAGAGGGAAAGGTGGCCCTGAGAATGCGAGCTGCACCTATAAGGGTGTTAGGCAGAGAACTTGGGGCAAATGGGTTGCTGAGATCCGTGAACCCAATCGTGGTGCTCGTCTCTGGCTTGGTACCTTTGAGACCTCTCATGAAGCTGCTCTTGCTTATGATACTGCTGCTCGTAAGCTCTATGGCCCTGATGCTAAGCTCAATCTCCCTCTTCATCACCATCACCATTCTTCTTCTTCTTCTTCTTCTTCTAGTAATTCCCCCCAAATTCATCGCAACCACCCTCTTATTAATAATATTATTACTACTCCACCACCAGCAACACCACTTATTAGTTCTTCTTGTAATAATAGCGTCAACACAGCGTCGTCCATGGTGGCCTCTCTTCACCAGCAAGTTAGGCCATCAATATACCGCAGTGATTCTTCATCCATTGTGTCTTCTTCCCTTCCATTGGACAGCACCAACAATAAGGAGGAGGATGTTCTTCGACCGTTCTGGGGATCAGTGAATGATTGTTTGCCTGTGTTTGATGAATCAATCTGGACAGAAGCAGCCATGTCCCTTGATTTCCCTGTAATTGCTGCTGCAGAGGCTGCCACTGGAATTTACCCAAACGCCAACTTGGCAGATGTTGGTGTTTGGGACACCCCATGGTGCATGTAA 747 0.4779 MLKSGTMGMEERKQAKKPAQASSRKGCMRGKGGPENASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFETSHEAALAYDTAARKLYGPDAKLNLPLHHHHHSSSSSSSSSNSPQIHRNHPLINNIITTPPPATPLISSSCNNSVNTASSMVASLHQQVRPSIYRSDSSSIVSSSLPLDSTNNKEEDVLRPFWGSVNDCLPVFDESIWTEAAMSLDFPVIAAAEAATGIYPNANLADVGVWDTPWCM 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g00108 248 MobiDBLite consensus disorder prediction 95 125 - -
Adu08g00108 248 SUPERFAMILY DNA-binding domain 40 98 IPR016177 GO:0003677
Adu08g00108 248 MobiDBLite consensus disorder prediction 101 125 - -
Adu08g00108 248 Gene3D AP2/ERF domain 40 99 IPR036955 GO:0003700|GO:0006355
Adu08g00108 248 PRINTS Ethylene responsive element binding protein signature 41 52 IPR001471 GO:0003700|GO:0006355
Adu08g00108 248 PRINTS Ethylene responsive element binding protein signature 63 79 IPR001471 GO:0003700|GO:0006355
Adu08g00108 248 SMART rav1_2 40 103 IPR001471 GO:0003700|GO:0006355
Adu08g00108 248 CDD AP2 39 97 IPR001471 GO:0003700|GO:0006355
Adu08g00108 248 MobiDBLite consensus disorder prediction 1 39 - -
Adu08g00108 248 Pfam AP2 domain 40 89 IPR001471 GO:0003700|GO:0006355
Adu08g00108 248 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 15 225 - -
Adu08g00108 248 ProSiteProfiles AP2/ERF domain profile. 40 97 IPR001471 GO:0003700|GO:0006355
Adu08g00108 248 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2D 15 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g00108 Adu-Chr8 1454009 1455344 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Adu08g00108 AP2 2.9e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu08g00108 08 1454009 1455344 Adu08g00108 08 1454009 1455344 ECH
Adu06g01238 06 16678198 16680415 Adu08g00108 08 1454009 1455344 PCT