Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g03242 ATGGAAAATGATATGTTCTTCCATCAGGGATGGCCATCGTTTGTGGGAGATCATCATCTGGAATGCGGTGATCTGTTGGTTTTCAGATATGAAGGTTACCTAAATTTCACCGTGCAAGTATTTGACAAGAATAAATGTGAAAAACTGGGATTAAATTCTGAATGCAGTCAAAATTCAGGCAACTTTGATAATATAAGAGGTCACAAAAGAGATAGGAATGAGAAATCCTCTCTGGATGTTATTGTTGAAGGGGCTACAAAGAAAATGAGAGGCAACAATGCCGACAACCAAGAACTTAAGCTGAGTATAGTTGGGAAAGACATATTGCAATATGAGTTAGTAAAACCTATTAGTATGTTCAAAGAAAAAGAAGAAACTTCCAGAGCATGTTCAACTAATGACATTCCGTTGCCTTTTCATGTGGGGAATAGCAATGAAGATGAAGATGCTGATCAATATATTCTGAATGGTATTTCACTATCAAACTTAGCAGCACATGATGAGAAAAAAGTAGCTCGATCATTTACTTCATCTTTTCCATATTTTGTAAGGATCATGAAAAGCTTCAACGTTAGCGGTTCATATACTCTGAATATCCCGTATCAATTTTCAATGGCACATCTCCCAAACTGCAAGATAAAGATTATCCTCCATAATTTGAAAGGAGAACATTGGACTGTTAATTCTGTGCCATCAACAAGAGTGCATACAAGTCACACTCTCTGCGGAGGATGGATGGCCTTTGTGCGTGGCAATAACATAAAGGTTGGAGATGTCTGCATTTTTGAACTCGTGCATGAGTGTGAATTACTTGTTCGTATTGCTGGAGGTGGAAAAGATCTACAAGACCCGGTTGCGAAACCAGATTTAAGTAACCCTAGTGCAGGACATGCTATCACTTGCCATAAGGCTTCAAGATATATGTCGGTGAATCCTAAAGACAACCCAAAAAACATAATAAACGTTGATCAATCAGTTAAAAAGCGGTCAAAGGTTGGTCAAGAAGCTGCTTTTTCCATTGAATTAAGGAAATCTGGTAAAAGATCAAATTCTTCTAAGAAAACGGGGCTTGGCAATCGGACGAAAGCTGCCAATAAAAAGTTGGCTGCTCAGAAGAGGCATCGTGTTGAAGATGAATTAAGCTCACAAGCTAATGCTGGTTTGAGAATGTTGTTTGCACTCGATGAACAAAGAGTGGCTCAAGCCTTTACTTCCCCTTTTCCTAATTTTGTGAAAATCATGAAAAAGTTCAATGTCAGTGGATCATACACTTTGAAAATCCCATACCAGTTCTCTGCTGCACATCTCCCAGCCTACAAAACAGAAATTATTCTTCGAAATTTAAAAGGTGAAAGTTGGACTGTGAACTCTGTACCGGACGCAAAAGGCAGAACGGTGCATACCTTTTGTGGTGGATGGATGGCCTTTGTTCGCGATAATGACATCAATTTTGGGGACACATGCATATTCGAACTTGTTGCTCAGGGTGAGATGCGGGTTTATATATCTGGGGTGGGAAAGGAGGGGCTTGAACATCAAAATGGTCAAGTGAAACTTAATAGATTATTGGCCAACGTTCCATCTACCTGCTAA 1593 0.393 MENDMFFHQGWPSFVGDHHLECGDLLVFRYEGYLNFTVQVFDKNKCEKLGLNSECSQNSGNFDNIRGHKRDRNEKSSLDVIVEGATKKMRGNNADNQELKLSIVGKDILQYELVKPISMFKEKEETSRACSTNDIPLPFHVGNSNEDEDADQYILNGISLSNLAAHDEKKVARSFTSSFPYFVRIMKSFNVSGSYTLNIPYQFSMAHLPNCKIKIILHNLKGEHWTVNSVPSTRVHTSHTLCGGWMAFVRGNNIKVGDVCIFELVHECELLVRIAGGGKDLQDPVAKPDLSNPSAGHAITCHKASRYMSVNPKDNPKNIINVDQSVKKRSKVGQEAAFSIELRKSGKRSNSSKKTGLGNRTKAANKKLAAQKRHRVEDELSSQANAGLRMLFALDEQRVAQAFTSPFPNFVKIMKKFNVSGSYTLKIPYQFSAAHLPAYKTEIILRNLKGESWTVNSVPDAKGRTVHTFCGGWMAFVRDNDINFGDTCIFELVAQGEMRVYISGVGKEGLEHQNGQVKLNRLLANVPSTC 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g03242 530 Gene3D - 164 276 IPR015300 -
Adu06g03242 530 Gene3D - 395 505 IPR015300 -
Adu06g03242 530 SUPERFAMILY DNA-binding pseudobarrel domain 175 275 IPR015300 -
Adu06g03242 530 MobiDBLite consensus disorder prediction 343 380 - -
Adu06g03242 530 CDD B3_DNA 3 42 IPR003340 GO:0003677
Adu06g03242 530 SUPERFAMILY DNA-binding pseudobarrel domain 3 48 IPR015300 -
Adu06g03242 530 PANTHER B3 DNA-BINDING DOMAIN PROTEIN 2 385 - -
Adu06g03242 530 PANTHER B3 DNA-BINDING DOMAIN PROTEIN 387 528 - -
Adu06g03242 530 CDD B3_DNA 408 502 IPR003340 GO:0003677
Adu06g03242 530 CDD B3_DNA 180 274 IPR003340 GO:0003677
Adu06g03242 530 ProSiteProfiles B3 DNA-binding domain profile. 410 506 IPR003340 GO:0003677
Adu06g03242 530 Gene3D - 1 46 IPR015300 -
Adu06g03242 530 SUPERFAMILY DNA-binding pseudobarrel domain 403 504 IPR015300 -
Adu06g03242 530 ProSiteProfiles B3 DNA-binding domain profile. 182 278 IPR003340 GO:0003677
Adu06g03242 530 PANTHER B3 DOMAIN-CONTAINING 387 528 - -
Adu06g03242 530 PANTHER B3 DOMAIN-CONTAINING 2 385 - -
Adu06g03242 530 SMART B3_2 410 506 IPR003340 GO:0003677
Adu06g03242 530 SMART B3_2 182 278 IPR003340 GO:0003677
Adu06g03242 530 ProSiteProfiles B3 DNA-binding domain profile. 1 44 IPR003340 GO:0003677
Adu06g03242 530 Pfam B3 DNA binding domain 182 273 IPR003340 GO:0003677
Adu06g03242 530 Pfam B3 DNA binding domain 410 502 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g03242 Adu-Chr6 110766688 110768975 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Adu06g03242 B3 1.9e-14 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu06g03242 06 110766688 110768975 Adu06g03242 06 110766688 110768975 ECH