Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g03122 ATGGAATTTCTAGGAGCATTCCCTAATAATATAGAATTGGATTGCTTCAAAATGTTTTCTAATGAAAAAGAGCATGATTTCACTTACACTACTACTACTACTTCACAATTGTTTCTAGATCAAAGTTCATCACTTTTAGGAGAAGATGATGAATTGAATTTTGGATTAGTACAATCCACACTTTCCTCCAATTTTATTAGTGATGAAAATGAGCATTATTTGTTTCATTCTTTAGATGCTAATCCCAACACAAAAATGTTGCATTATAAGTCACAAGAAGAGAGTAGTTACAATAGCGGCGGTTTCAGTGGTGGTGACACTACTTTCTTCAATGCCAACATGGATCTTACAACAAACTACTACTATTCTAGTAATTACCATGATGATAATGTGCTAGCAAATGATGTTTCTATATCCATGGAGTTATTGGAAAATTATGATCATTATCAATGTCATCAAATGGAACATGTTGATGTTGTTCCAAACAATAAGCAGTTGGAGCTCAAGAGGAAGATTGTTGAAGTACCAGAATTTGATGTGTCTGCTGAAAACAATACAAGTAACGGATCTAAGAATCAAAAGAAAAAACATTTCGTCGCGAAAGATGAGCAAGATTGCATGAAAAATGAAAGGTGTAGGAAGAGAAAAGTTGTTAGAAATGGGAATGAAGGAGAAGAGAGAAATAATAATGTAGGGTTAGATGGACAGAGCTCAAGTAGTAACATTAACATATGTGAGGATGACAATGCTTCTGAAGAAAACAATGGAGGGGTAACTTCGGTATCTCACTCAAATGGGAAAACAAGAACCATTAGAGGAACAGCAGCAGATCCCCAGAGTCTCTATGCAAGGAAAAGAAGAGAGAGGATAAATGCGCGGTTAAGAATTTTGCAGGGTCTTGTTCCAAATGGAACAAAGGTTGATATAAGTACAATGCTTGAAGAGGCAGTTAATTACGTGAAATTTTTGCAGCTCCAAATCAAGGATGAGGTCGTCACCAAGCGGAGGAACAAAGATGAGGTTCGAACCGTGTTTGAGTGCTACCGTCGCATCAAGCTCTTCTTGTCAAAGAAGGAGAGTGCTTTCATCCATGACATTGAACAGAGCTTCTTCGCTCTCATCAATGCTTCCAGAGGTTGTTTGAGTGGACAAAGAATCGCGGCTGATGTTATTCCTCGATATGCATTCCACTGTCCAACAGCTTTAGAAGCTGCTGCTAAAGTGGTTATCAATATGTATAACTGGAGTTCCACACTAATCAGTAGAGGAGAAGATGCTGATGGTGTTGCATTTGAAACTGCTAGAGCTTGTATTTTTGGCTTAGCTGATATTTGCTGTGCTGCTTCTTCAGTGGCACCAAAATCTGCTGTAATCAGAGGAATTTGCTCTGCAGTTTTTCAGAATGTGCTATCCTTTTTCATATCTTTACTTGAGGGAAAGGACGCCTTACAGGTGTTCGATAAGAGTTTCCTGAAAATGCAAGATTCCCCTGATGAATTTTCTAAGTTGAAGCAAAAAGTTTTAGATGAAGATGAGCCCTCATTGACTAAATTGTCAAAACTCCATGCAGTATGTTTATTTTGGATATTCTTCTCTTGCCCAAAAGACATGCTTGCAGCTTGTTTGGAGCTCTTAGGCTCTGCCACAAAGGAGGGTGCCTCTGAACAAGGACAATGTTTTCTGAGCCTGGTGACTAGAAATGTTTTGGTTGATGAAGCAGTTTGCTTTCTGGATAATGTTAATGGCGGATCTAAGCCAGGTACAGGTTCAACAGATTCAGCTATCCGCGAAAACGAGGTTGATGAGGAAATAATGACAGATGTCATCCGAGTTGCCGATGTTGATTCGTCTATTCCAAAGAGTTGCTTGCTCACACTGGTCCTCGACAAAGATCCCTCACTACAGAAATGGATGTCACGCAAATCTAAGAAGTTATTGGACTTGCCTACTACTGCTTCAATGGAAATTACAGCAGTACTTCTAGGAATTCTTGGAAAGTTTGTTCCACAAACTGATTTGGAAGACTACCAACCAGATAGTGATGAAGATAGATCTGATTCTTTGATTTACACAAATAGGAACTATGCGGTACCTAGGATTTCAGAGGAACGTGACAGTATTGGTGAAACATCTGGAAGAGTTTCTCTTGGCACCAACCCTGTATCAAAAGTAGGTTCGCATTTCGACAATGGAGCTTCAAGGCCCATGGGCATTGAGATGGGGGAGGGAGGGAGTATGTCCCATGCTAGATGTTCCACACCTAGGGATTCAGCAACCCATCAAATAACCTCATCTTCAATGAAGACACCATTTGGCTCTAGGAGTAATTCATTTGAAGCTGCTTCAACAAAAAGTCAAACTGTCTGGTGCCTTGATGGGGATCCTGCTGCCATGGATATTGTCTCTGCTTCAACAAGGCTCTGGGTTGGTTTTATACCACCTGACGTGCCTGAAAGCCATATTAGGTTTCAATCAGAAAGATATGGTCAAATTGAACGGTTTGTTTTCTTCCCCATGAAAGGTTTTGCCTTTGTTGAGTACAGAAGAATCATTGATGCAATCAAAGCTAGACACTATCTACCGGGAAACTTCCCGTGTCGTGTAAGATTCATCGATACAGGATTTGGAACTAGGGGTGCAATGAATGGTGTTGCCATTGGCTCTAGTTCTCATATCTATGTTGGAAATATTTCTTCTCAATGGGCCAAGGATGAGATCCTACATGAATCAAGAAAAGTAATCCATAAAGGTCCTCCTGCACTTATTGATCTCAGCTGTGAGTGTGCATTACTTATGGAATTTGAAACTCCTGAAGAAGCTACCTCTGTCATGTTGCATCTGAGACAGTTTCGAAGAGAAAGAAGCAACTATAACTTACATTTTGGCCCAGGAACAGTTAATGCTGGAATTGGGCACCCGTATATGGACGGTTCAAGGTCTGCATCTGCCCCTTCCCATCCTGACCTTAAAGTTAGCATCCCAACAAACATGTCACATGGTATTTCTGGATCACCTCATGCTCGAACGTTATCAGCTGGATCACCTCATGCTCGAACCTTACCCGTGAGCCCTGCTGACAGTTCTCGCACAAGGATGTCTCACTTGTCTTCGTTGCTAGCTTCATTGTGTACAAAATACAATATTAATCAAAACATAGGTCTCCATGATCACTATATGACTGGAACTGGTAACAGTTATGCTCCTTCGATGCGTGATGAAGATACAGCACCATCGAGTACTTTGTGGATAACTATTCCATGGAGTAGCTCTCAATTCCTCACAGATGATGAACTAATGACTATCTGCAATCTTGCTATTGGAGGCTCTGGCTCCATTTTGCGCTTGACACAGGCAAACATGCAGATGCCGTGTGGTTGGTTTGTTGAATGCAGTAATACTGATGGTGCAGTTTCTGTTCTAAAGAATCTTCGTAGTTGTCCAGGGTTGTTCTTCCAAGTAGAATTCAGTAAATCTGGAAATCAGACTGCCGGACCTTCTTCAGCCAAACCAGAGGGCAACTCCATGGAACTAGTATCCCCCAGAACAAATTCCCAGAATCACAGTAGTGGAATACACCGTGCACCTCCACCCCAGTCGAACTGGCATTTTCCTGGTTCCAGTAACATGCCAGAAGTTGGAGCAAGGAAAACTGATGGTTATGATAATGTATCACTAGACACTCATCAAGGAGGACCTTCCATTCCGCCACCACAACAAATTCAGTCAGCTCCCTTCATTCGCCCTGTTTATGCCCCTCCAAATGGTCCGTGGGATCCACGTGGAATAAATAATCCTTTACCTGCCAATCACTTCACGCCTGGAGTGATGCCTAATAATCATTTACCATTTATACCTGCTTCAGTAACTCCACTTGCTCACATCCAGGGAACCCCAATGCATCCTTATGGCCAGCTGATGCCCCCACCAGTAATGGCACCACCTTTGGCTTCCTTACCACATCCTCAGCTTGAAATTCCACCTCCACCTCCACCTCCACCTGCACGTCTGCCTTCTCCACCACCCTTGCCCCAAACTCAGCCACCCATGGTTCCTCCACCACCTGGTTCTCCTCCACCTCCTCCTCCACCATTGCCTGCTCAGGAAGCAGTTAGTATGGAATGTTCAGGGCAGTCTCTGCAGTATCAGTGGCAGGGGGCTCTTTGTAAAAGCGGGGTTAACTACTGCACAATTTATGCATGCCGAGCAGATTCAAATGTTTGCAAATACACAAATGCCACACCTGAACCTTCTGAGTGGCCCACAAAACTAGACATGACTAAACGCACTGATATTCGACATGTGAAATCAACATTTGCAGCTACACCACCTAACAGGAGGGAAGTGTGCCGTTTAATCCCATCTTCCCCAAGTGAACACAAACGGTTTCAGGATTTCATAACATACTTAAAGCAGAGGGATTGTGCCGGAGTCATTAAAATCCCAGCCGCAAAATCCATGTGGGCAAGGCTGCTCTTCATACTCCCATACTCGCCTGAAACATGCACTTTGCTTTCTATTGCACCACATCCATCTGATTGCCTCATCGCTTTGGTTCTTCCAAAAGAAATGAACTTTGAGTGGGCATGA 4587 0.4253 MEFLGAFPNNIELDCFKMFSNEKEHDFTYTTTTTSQLFLDQSSSLLGEDDELNFGLVQSTLSSNFISDENEHYLFHSLDANPNTKMLHYKSQEESSYNSGGFSGGDTTFFNANMDLTTNYYYSSNYHDDNVLANDVSISMELLENYDHYQCHQMEHVDVVPNNKQLELKRKIVEVPEFDVSAENNTSNGSKNQKKKHFVAKDEQDCMKNERCRKRKVVRNGNEGEERNNNVGLDGQSSSSNINICEDDNASEENNGGVTSVSHSNGKTRTIRGTAADPQSLYARKRRERINARLRILQGLVPNGTKVDISTMLEEAVNYVKFLQLQIKDEVVTKRRNKDEVRTVFECYRRIKLFLSKKESAFIHDIEQSFFALINASRGCLSGQRIAADVIPRYAFHCPTALEAAAKVVINMYNWSSTLISRGEDADGVAFETARACIFGLADICCAASSVAPKSAVIRGICSAVFQNVLSFFISLLEGKDALQVFDKSFLKMQDSPDEFSKLKQKVLDEDEPSLTKLSKLHAVCLFWIFFSCPKDMLAACLELLGSATKEGASEQGQCFLSLVTRNVLVDEAVCFLDNVNGGSKPGTGSTDSAIRENEVDEEIMTDVIRVADVDSSIPKSCLLTLVLDKDPSLQKWMSRKSKKLLDLPTTASMEITAVLLGILGKFVPQTDLEDYQPDSDEDRSDSLIYTNRNYAVPRISEERDSIGETSGRVSLGTNPVSKVGSHFDNGASRPMGIEMGEGGSMSHARCSTPRDSATHQITSSSMKTPFGSRSNSFEAASTKSQTVWCLDGDPAAMDIVSASTRLWVGFIPPDVPESHIRFQSERYGQIERFVFFPMKGFAFVEYRRIIDAIKARHYLPGNFPCRVRFIDTGFGTRGAMNGVAIGSSSHIYVGNISSQWAKDEILHESRKVIHKGPPALIDLSCECALLMEFETPEEATSVMLHLRQFRRERSNYNLHFGPGTVNAGIGHPYMDGSRSASAPSHPDLKVSIPTNMSHGISGSPHARTLSAGSPHARTLPVSPADSSRTRMSHLSSLLASLCTKYNINQNIGLHDHYMTGTGNSYAPSMRDEDTAPSSTLWITIPWSSSQFLTDDELMTICNLAIGGSGSILRLTQANMQMPCGWFVECSNTDGAVSVLKNLRSCPGLFFQVEFSKSGNQTAGPSSAKPEGNSMELVSPRTNSQNHSSGIHRAPPPQSNWHFPGSSNMPEVGARKTDGYDNVSLDTHQGGPSIPPPQQIQSAPFIRPVYAPPNGPWDPRGINNPLPANHFTPGVMPNNHLPFIPASVTPLAHIQGTPMHPYGQLMPPPVMAPPLASLPHPQLEIPPPPPPPPARLPSPPPLPQTQPPMVPPPPGSPPPPPPPLPAQEAVSMECSGQSLQYQWQGALCKSGVNYCTIYACRADSNVCKYTNATPEPSEWPTKLDMTKRTDIRHVKSTFAATPPNRREVCRLIPSSPSEHKRFQDFITYLKQRDCAGVIKIPAAKSMWARLLFILPYSPETCTLLSIAPHPSDCLIALVLPKEMNFEWA 1528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g03122 1528 MobiDBLite consensus disorder prediction 1158 1206 - -
Adu06g03122 1528 SUPERFAMILY RNA-binding domain, RBD 794 864 IPR035979 GO:0003676
Adu06g03122 1528 SMART rrm1_1 806 869 IPR000504 GO:0003723
Adu06g03122 1528 Pfam SPOC domain 1377 1519 IPR012921 -
Adu06g03122 1528 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 274 323 IPR011598 GO:0046983
Adu06g03122 1528 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 807 862 IPR000504 GO:0003723
Adu06g03122 1528 MobiDBLite consensus disorder prediction 1158 1237 - -
Adu06g03122 1528 SMART finulus 280 329 IPR011598 GO:0046983
Adu06g03122 1528 Gene3D - 274 332 IPR036638 GO:0046983
Adu06g03122 1528 Gene3D - 796 877 IPR012677 -
Adu06g03122 1528 Pfam Helix-loop-helix DNA-binding domain 284 324 IPR011598 GO:0046983
Adu06g03122 1528 MobiDBLite consensus disorder prediction 705 777 - -
Adu06g03122 1528 MobiDBLite consensus disorder prediction 1002 1029 - -
Adu06g03122 1528 MobiDBLite consensus disorder prediction 217 280 - -
Adu06g03122 1528 MobiDBLite consensus disorder prediction 750 777 - -
Adu06g03122 1528 MobiDBLite consensus disorder prediction 1313 1367 - -
Adu06g03122 1528 CDD RRM3_Spen 807 872 - -
Adu06g03122 1528 PANTHER ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 2 ASC-1 COMPLEX SUBUNIT P100 274 1527 - -
Adu06g03122 1528 MobiDBLite consensus disorder prediction 1313 1371 - -
Adu06g03122 1528 PANTHER NUCLEIC ACID BINDING PROTEIN 274 1527 - -
Adu06g03122 1528 MobiDBLite consensus disorder prediction 224 275 - -
Adu06g03122 1528 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 805 899 IPR000504 GO:0003723
Adu06g03122 1528 MobiDBLite consensus disorder prediction 182 202 - -
Adu06g03122 1528 MobiDBLite consensus disorder prediction 711 726 - -
Adu06g03122 1528 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 279 329 IPR036638 GO:0046983
Adu06g03122 1528 CDD bHLH_AtIND_like 275 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g03122 Adu-Chr6 109383565 109398818 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu06g03122 168 328 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G27740 49.689 1.41e-32 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Adu06g03122 SPOC 1.2e-16 CL0616
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu06g03122 06 109383565 109398818 Adu06g03122 06 109383565 109398818 ECH