Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g01262 ATGAAGCTTATAGAGAGTGGTGCAGCATTAATGGCTTCCTTAGAAGAAAAGGTTAAAACTTGTGGTGTTGGTGTTGTTGGGGGTCAAACTCTAGTTGCCGAGATGAAGCTCCTCAAGGAAATGCAAGAACACTCTGGGGTGAGAAAGACTTTGAATTCAGAACTGTGGCATGCTTGTGCTGGCCCTCTTGTCTCTTTGCCTCAAGTGGGAAGTCTTGTTTATTACTTTCCCCAGGGACATAGTGAGCAGGTGGCAGCTTCCACCAGAAGAACAGCAACATCTCAGATTCCAAACTATCCAAACCTTCCATCTCAGTTGCTCTGCCAAGTTCAAAATGTCACACTTCATGCAGACAAAGATACAGATGAAATCTATGCTCAAATGAGTCTCCAGCCCTTGAATTCGGAGAAAGATGTGTTTCCTATATCTGATTTTGGCCTAAAGCACAGCAAGCATCCAACTGAGTTTTTCTGCAAAACTTTGACTGCAAGTGACACCAGCACACACGGCGGTTTCTCAGTTCCACGGAGGGCGGCAGAAAAGCTCTTTCCTCCACTGGACTACACAATTCAGCCTCCAACACAAGAACTAGTTGTCCGTGATTTGCATGACAATACTTGGACATTTCGACATATATACCGGGGTCAGCCCAAGAGACACCTTTTAACAACAGGATGGAGTTTATTTGTCGGATCAAAAAGGCTTAGAGCAGGAGATTCTGTTCTATTTATCAGGGATGAGAAATCACAACTGCGAGTTGGTGTTAGGCGTGTTAATCGCCAACAAACAACATTGCCATCATCAGTTCTTTCTGCTGATAGCATGCACATTGGTGTGCTTGCTGCTGCAGCTCACGCGGCTTCTAACCGAATTCCTTTCACTATTTTCTATAATCCAAGGGCATGCCCTTCAGAATTTGTTATTCCACTTGCTAAGTACAGAAAATCTGTATATGGGACACAACTCTCAGTTGGCATGAGATTTGGTATGATGTTTGAGACAGAAGAATCCGGTAAGCGCAGGTATATGGGTACAATAGTTGGTATCAGTGACTTGGATCCTTTGAGATGGCCTGGTTCTAAGTGGCGAAATATTCAGGTGGAGTGGGATGAACCAGGATGTGGTGACAAGCAGAATAGAGTTAGTGTATGGGAAATTGAGACTCCTGAAAGCCTTTTTATATTTCCTTCTTTAACTTCGAGTCTAAAACGGCCATTACAATCTGGATTTTTGGAAAACGACTGGGGAGCTTTGATACGAAGACCATATATAAGAGTTCCTGAAAACGGTGCAACGGAGCTCGCGAATTCAATGCCAAATATCTACTCTGAACACCTGATGAAAATGCTTTTGAAGCCACAACTTATTAACAATAATGGAGCCATGGCCATGCAACAAGAATCTGTTGCTATGAGAGGTACTCTACAAGATGCAAAGACTACACAGGCACCAGAGAACCATAAAGTTAATCTTGCTAGTACAGAGAACCTGCCACTGAAAAATTTGTATTCTCAATCTGTTCCTGAACAAGCTAATGTCGTGAATTTACATTCTCAAGCGAAAAATGATAACCATATGTCTTCTGGAACAGTTATTGATAAGCCGAAGCTCGAACCTGAGGTATTAAATGATCAAATGTATGAGATTCCATCTGGAGGAACAGGAACCAACATTGAAAAAGTGGCCTCAAATCCTGCTAACTCTCAAAGTGTTGCGAACCAATTGGCATTCCTTAATCAAAACCAGAGTCATCCACTTGCGCAATCCGGTTCATGGCCTATACAACCTCAGTTAGAATCATCGGTATCCCATCCTCAACTTGTTGACATGCCTCAAGGTGATTCTGCAATTGCAAACAGCATGCTTCCTCAGCTAGACATTGATGAATGGATGGTGTATTCTTCTAACCAAACTTTTGCTAACCAAAACCGATCAACTGGGCCGGTATCAGATTTTCAAGAGCATTCTGCCGCACTTCAACCTCAAGTAGTGAATCCTTCCATGCCAATGAACCAAGAAGTGTGGGATCAATATGTCAAGAATTTTAAGCTTTTGTCTCAAGTAGACCAGATGACATCTGTCTGTCAGCCGGGGATGTACAGCCTCAACGGTATATCGAGTTCAAACAATTTGAGGGATCTTTCAGCTGAGAGCAATAATCAAAGTGAAATTTGTGTCGATGTTAGTAATAGTGTAAATACAACCATGGTTGATCCTTCAACTTCAAGCACCATTTTGGATGAGTATTGCACACTGAAGGAGAGGGATTTCCAGAATCCACAAGATTGCATCGTCGGCAACTTAAGTTCTAGCCAGGATGTCCAGTCTCAGATAACCTCTGCAAGTCTAACTGAGTCACATGCCTTTCCTCTGCAAGACAACTCAGGTGGTACATCTTCAAGTCATGTTGATTTTGATGAAAGCAGCTTTCTGCAGAATAACTCATGGCAACCAGTTGCTGCGCCCGTGCGAACCTACACTAAGGTGCAAAAGGCAGGATCTGTAGGAAGATCAATTGATGTCACAACTTTCAAGAACTACGAAGAGCTGATCCGCGCGATTGAATGCATGTTCGGACTAGATGGTCTGCTGAATGACACCAAAGGTTCCGGCTGGAAACTGGTGTATGTGGATTATGAGAGTGATGTTCTTCTTGTTGGGGATGATCCTTGGGAGGAATTTGTCGGCTGCGTTCGATGCATCAGAATCTTATCGCCTTCAGAAGTTCAACAGATGAGTGAAGAGGGAATGAAGCTTCTCAACAGTGGAGCCTTGCAAGGGATCAATGTTTGA 2793 0.4322 MKLIESGAALMASLEEKVKTCGVGVVGGQTLVAEMKLLKEMQEHSGVRKTLNSELWHACAGPLVSLPQVGSLVYYFPQGHSEQVAASTRRTATSQIPNYPNLPSQLLCQVQNVTLHADKDTDEIYAQMSLQPLNSEKDVFPISDFGLKHSKHPTEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTIQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLRAGDSVLFIRDEKSQLRVGVRRVNRQQTTLPSSVLSADSMHIGVLAAAAHAASNRIPFTIFYNPRACPSEFVIPLAKYRKSVYGTQLSVGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKWRNIQVEWDEPGCGDKQNRVSVWEIETPESLFIFPSLTSSLKRPLQSGFLENDWGALIRRPYIRVPENGATELANSMPNIYSEHLMKMLLKPQLINNNGAMAMQQESVAMRGTLQDAKTTQAPENHKVNLASTENLPLKNLYSQSVPEQANVVNLHSQAKNDNHMSSGTVIDKPKLEPEVLNDQMYEIPSGGTGTNIEKVASNPANSQSVANQLAFLNQNQSHPLAQSGSWPIQPQLESSVSHPQLVDMPQGDSAIANSMLPQLDIDEWMVYSSNQTFANQNRSTGPVSDFQEHSAALQPQVVNPSMPMNQEVWDQYVKNFKLLSQVDQMTSVCQPGMYSLNGISSSNNLRDLSAESNNQSEICVDVSNSVNTTMVDPSTSSTILDEYCTLKERDFQNPQDCIVGNLSSSQDVQSQITSASLTESHAFPLQDNSGGTSSSHVDFDESSFLQNNSWQPVAAPVRTYTKVQKAGSVGRSIDVTTFKNYEELIRAIECMFGLDGLLNDTKGSGWKLVYVDYESDVLLVGDDPWEEFVGCVRCIRILSPSEVQQMSEEGMKLLNSGALQGINV 930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g01262 930 Pfam Auxin response factor 283 366 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Adu06g01262 930 Gene3D - 321 393 - -
Adu06g01262 930 Gene3D - 820 913 - -
Adu06g01262 930 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 37 928 IPR044835 GO:0003677|GO:0006355|GO:0009725
Adu06g01262 930 SUPERFAMILY CAD & PB1 domains 828 903 - -
Adu06g01262 930 CDD B3_DNA 156 257 IPR003340 GO:0003677
Adu06g01262 930 Gene3D - 154 258 IPR015300 -
Adu06g01262 930 Pfam B3 DNA binding domain 157 258 IPR003340 GO:0003677
Adu06g01262 930 PANTHER AUXIN RESPONSE FACTOR 5 37 928 - -
Adu06g01262 930 Pfam AUX/IAA family 821 911 IPR033389 -
Adu06g01262 930 SMART B3_2 157 259 IPR003340 GO:0003677
Adu06g01262 930 SUPERFAMILY DNA-binding pseudobarrel domain 145 286 IPR015300 -
Adu06g01262 930 ProSiteProfiles B3 DNA-binding domain profile. 157 259 IPR003340 GO:0003677
Adu06g01262 930 ProSiteProfiles PB1 domain profile. 824 908 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g01262 Adu-Chr6 17088479 17093966 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Adu06g01262 AUX_IAA 4.7e-11 CL0072