Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g01228 ATGTATCAGAACCAGGCCTTTCCTTCAGGATCCTATGAAGAAATGTTATCTGGGAATTCCCTATTAACTCATCATAACTATGGCGATTCGGTTGGAGGAGGAGGACACAACAATGAGCTGAAGTTCATCACCTCTCTAGGTGAATCAATGACTATGCAGCCTCTTGAAGAGCATTCCAATGCTGCTGCGACCGGCAATCCATCTTGCAACTCTTTTGGTGATCAAAACATTCAGTGCCAAGGTTTGTCGCTTAGCCTTGGATCGGTTATGCCTTCTATTGCAACATCAATGCCTCATCACTTTCAATACCCGCAGTATCACAACTCTAGCTTCACTTCACTGATGAATGCCATGCCAAACTTAAAGGGAAATAATGGATCATCTCTTAAGGATGATGAGGTGAGAAACACCGAATGCATGACCCCGCCAATGTCTTCCGGAGGATTCTACAACTCTATAAAGAGGGAAGGTTTGTATAACAATACTAATCATCCTTCAATGTGCCTCAGCGAAGGCCAGGTTGATCCAGGCCTACACGGATCGGCTGGTTTTTCCTCCAGTACTGCCTTAAACTCACAATACCTGAAGGCAGCACAGGAGTTGCTTGATGAAATAGTTAATGTTCGAAAGGCTTTGAAGCAACCCGGATTGGAGAAACAACAGAGTTTTCGTGATGCCGGATTAGATGGCTCCAAAGATTCTGATGGAAAATCTAATAGTCAATCTATGCAAGTATCTTCAGGTGCCAATGGTTCTGCTGTAAACTCTTCAACCGAGCTATCGCCGGCAGACCGACAGAATTTGTTGGACAAGAAGACAAAACTTTTGGCTATGTTAGATGAGGTAGATAAAAGATACAGACAGTATTGCCATCAAATGCAAATTGTGGTATCATCATTTGATATGGTTGCCGGGTGTGGAGCTGCCGAACCATACACTGCGCTTGCATTGCGCACAATTTCACGCCACTTTCGATGTTTGCGCGACGCCATCAGTGGCCAGATTCAAGTGACTCAGAGGAGCCTTGGAGAGCAAGAGGGAATACCTCGGCTCCGCTACGTCGATCAGCAACTAAGGCAACAAAAGGCACTTCAGCAACTTGGTGTGATGAGGCAAGCTTGGAGACCTCAGAGGGGACTTCCTGAGAGCTCTGTTTCTATACTTCGCGCGTGGCTATTCGAGCATTTCCTTCATCCTTATCCAAAGGATTCAGAGAAGATTATGCTGGCAAGGCAAACAGGCTTGACCAGAAACCAGGTGGCAAATTGGTTCATAAATGCAAGGGTGCGGCTATGGAAGCCAATGGTTGAAGAAATGTATAAAGAAGAATTTGGTGATTCTGAGATGAGTTGCAACCTCTTATCTGAAAACACCATACCAAAAGCTTCAAGAGATGATGTTCAAGTTTCTGATAATAACAAAAGAGAAGAATCACAAGAAAATTTGGCAGCTGTTGATGATAGTGTTCAACATGGTATCCAAAGTAGTGATTATGGTGAAAACCTCATGGATTCTTCTTCTTCAAGGACTAGTAGGAAATTGCAACAATGTGATCAAAGATTTAACATGAAAAACACACCGTTTTCAAATGCTTCTACAATACAAATCAATCACCATAATGGTCATGATGATGGTAATGGTTGCTTAGCTTCTACTCATGCAACATATGATTATTCCGCGTTGGGAAACTTTGCGGCCGTTGGTGGCCATGTGTCCCTTGCGCTCGAGTTGAGGAACCGCGAGAGCAATGGATTAGGCATGTCAAATGGTGATGAGATACACAACAAAAGAAGTAGTAACCAGACTTTGGCTTCTTCATCTGAGAATGATTTGTTGGATTATCATTTGACAGAACAAGAGAAGCAACAGCAACAACAACACAAGTTTGGAAATCCACAACAACGGTTGTTACACGAGTTTGTTGTTTGA 1929 0.4329 MYQNQAFPSGSYEEMLSGNSLLTHHNYGDSVGGGGHNNELKFITSLGESMTMQPLEEHSNAAATGNPSCNSFGDQNIQCQGLSLSLGSVMPSIATSMPHHFQYPQYHNSSFTSLMNAMPNLKGNNGSSLKDDEVRNTECMTPPMSSGGFYNSIKREGLYNNTNHPSMCLSEGQVDPGLHGSAGFSSSTALNSQYLKAAQELLDEIVNVRKALKQPGLEKQQSFRDAGLDGSKDSDGKSNSQSMQVSSGANGSAVNSSTELSPADRQNLLDKKTKLLAMLDEVDKRYRQYCHQMQIVVSSFDMVAGCGAAEPYTALALRTISRHFRCLRDAISGQIQVTQRSLGEQEGIPRLRYVDQQLRQQKALQQLGVMRQAWRPQRGLPESSVSILRAWLFEHFLHPYPKDSEKIMLARQTGLTRNQVANWFINARVRLWKPMVEEMYKEEFGDSEMSCNLLSENTIPKASRDDVQVSDNNKREESQENLAAVDDSVQHGIQSSDYGENLMDSSSSRTSRKLQQCDQRFNMKNTPFSNASTIQINHHNGHDDGNGCLASTHATYDYSALGNFAAVGGHVSLALELRNRESNGLGMSNGDEIHNKRSSNQTLASSSENDLLDYHLTEQEKQQQQQHKFGNPQQRLLHEFVV 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g01228 642 Pfam Homeobox KN domain 391 430 IPR008422 GO:0003677|GO:0006355
Adu06g01228 642 MobiDBLite consensus disorder prediction 233 264 - -
Adu06g01228 642 MobiDBLite consensus disorder prediction 217 265 - -
Adu06g01228 642 Pfam Associated with HOX 190 332 IPR006563 -
Adu06g01228 642 MobiDBLite consensus disorder prediction 586 606 - -
Adu06g01228 642 SUPERFAMILY Homeodomain-like 375 441 IPR009057 -
Adu06g01228 642 MobiDBLite consensus disorder prediction 467 482 - -
Adu06g01228 642 CDD homeodomain 374 435 IPR001356 GO:0003677
Adu06g01228 642 MobiDBLite consensus disorder prediction 461 514 - -
Adu06g01228 642 SMART HOX_1 374 438 IPR001356 GO:0003677
Adu06g01228 642 ProSiteProfiles 'Homeobox' domain profile. 371 434 IPR001356 GO:0003677
Adu06g01228 642 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 31 599 - -
Adu06g01228 642 SMART prehox3 182 333 IPR006563 -
Adu06g01228 642 Gene3D - 371 448 - -
Adu06g01228 642 MobiDBLite consensus disorder prediction 483 514 - -
Adu06g01228 642 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 10 31 599 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g01228 Adu-Chr6 16584280 16588386 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Adu06g01228 POX 4.2e-51 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu06g01228 06 16584280 16588386 Adu06g01228 06 16584280 16588386 ECH